Related papers: Tree Topologies along a Tropical Line Segment
Ultrametric trees are trees whose leaves lie at the same distance from the root. They are used to model the genealogy of a population of particles co-existing at the same point in time. We show how the boundary of an ultrametric tree, like…
Complex algebraic varieties become easy piecewise-linear objects after passing to the so-called tropical limit. Geometry of these limiting objects is known as tropical geometry. In this short survey we take a look at motivation and…
This is a survey article on trees, with a modest number of proofs to give a flavor of the way these topologies can be efficiently handled. Trees are defined in set-theorist fashion as partially ordered sets in which the elements below each…
Optimal transport provides a metric which quantifies the dissimilarity between probability measures. For measures supported in discrete metric spaces, finding the optimal transport distance has cubic time complexity in the size of the…
In this paper, we consider the problem of reconstructing trees from traces in the tree edit distance model. Previous work by Davies et al. (2019) analyzed special cases of reconstructing labeled trees. In this work, we significantly expand…
We study the classical result by Bruijn and Erd\H os regarding the bound on the number of lines determined by a $n$-point configuration in the plane, and in the light of the recently proven Tropical Sylvester-Gallai theorem, come up with a…
Extreme value statistics is the max analogue of classical statistics, while tropical geometry is the max analogue of classical geometry. In this paper, we review recent work where insights from tropical geometry were used to develop new,…
Let $p',q'\in R^n$. Write $p'\sim q'$ if $p'-q'$ is a multiple of $(1,\ldots,1)$. Two different points $p$ and $q$ in $R^n/\sim$ uniquely determine a tropical line $L(p,q)$, passing through them, and stable under small perturbations. This…
Topological phylogenetic trees can be assigned edge weights in several natural ways, highlighting different aspects of the tree. Here the rooted triple and quartet metrizations are introduced, and applied to formulate novel fast methods of…
Merge trees are a type of graph-based topological summary that tracks the evolution of connected components in the sublevel sets of scalar functions. They enjoy widespread applications in data analysis and scientific visualization. In this…
Construction of phylogenetic trees and networks for extant species from their characters represents one of the key problems in phylogenomics. While solution to this problem is not always uniquely defined and there exist multiple methods for…
In this paper we examine the relationship between hyperconvex hulls and metric trees. After providing a linking construction for hyperconvex spaces, we show that the four-point property is inherited by the hyperconvex hull, which leads to…
In this paper we present with algebraic trees a novel notion of (continuum) trees which generalizes countable graph-theoretic trees to (potentially) uncountable structures. For that purpose we focus on the tree structure given by the branch…
We introduce the graph theoretical parameter of edge treewidth. This parameter occurs in a natural way as the tree-like analogue of cutwidth or, alternatively, as an edge-analogue of treewidth. We study the combinatorial properties of…
While the positive Grassmannian is deeply understood through the rich combinatorics of plabic graphs and positroid cells, its tropical counterpart, the positive tropical Grassmannian Trop$_{>0}G(k,n)$, has lacked a comparable structural…
This is a survey article written for the Jahresberichte der DMV. Tropical geometry can be viewed as an efficient combinatorial tool to study degenerations in algebraic geometry. Abstract tropical curves are essentially metric graphs, and…
This article presents a new way to understand the descriptive ability of tree shape statistics. Where before tree shape statistics were chosen by their ability to distinguish between macroevolutionary models, the ``resolution'' presented in…
We give an introduction to Tropical Geometry and prove some results in Tropical Intersection Theory. The first part of this paper is an introduction to tropical geometry aimed at researchers in Algebraic Geometry from the point of view of…
We propose an algebraic geometric framework to study the expressivity of linear activation neural networks. A particular quantity of neural networks that has been actively studied is the number of linear regions, which gives a…
Accessibility percolation is a new type of percolation problem inspired by evolutionary biology. To each vertex of a graph a random number is assigned and a path through the graph is called accessible if all numbers along the path are in…