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This paper reviews strategies for solving problems encountered when analyzing large genomic data sets and describes the implementation of those strategies in R by packages from the Bioconductor project. We treat the scalable processing,…

Genomics · Quantitative Biology 2014-09-11 Michael Lawrence , Martin Morgan

In this paper we propose a Deep Autoencoder MIxture Clustering (DAMIC) algorithm based on a mixture of deep autoencoders where each cluster is represented by an autoencoder. A clustering network transforms the data into another space and…

Machine Learning · Computer Science 2019-03-28 Shlomo E. Chazan , Sharon Gannot , Jacob Goldberger

Protecting sensitive information against data exploiting attacks is an emerging research area in data mining. Over the past, several different methods have been introduced to protect individual privacy from such attacks while maximizing…

Cryptography and Security · Computer Science 2021-07-29 Hung Nguyen , Di Zhuang , Pei-Yuan Wu , Morris Chang

This paper proposes a new high dimensional regression method by merging Gaussian process regression into a variational autoencoder framework. In contrast to other regression methods, the proposed method focuses on the case where output…

Computer Vision and Pattern Recognition · Computer Science 2019-08-13 YoungJoon Yoo , Sangdoo Yun , Hyung Jin Chang , Yiannis Demiris , Jin Young Choi

This paper presents an extended version of Deeper, a search-based simulation-integrated test solution that generates failure-revealing test scenarios for testing a deep neural network-based lane-keeping system. In the newly proposed…

Currently, analysis of microscopic In Situ Hybridization images is done manually by experts. Precise evaluation and classification of such microscopic images can ease experts' work and reveal further insights about the data. In this work,…

Image and Video Processing · Electrical Eng. & Systems 2023-12-21 Aleksandar A. Yanev , Galina D. Momcheva , Stoyan P. Pavlov

The use of multiple Decision Models (DMs) enables to enhance the accuracy in decisions and at the same time allows users to evaluate the confidence in decision making. In this paper we explore the ability of multiple DMs to learn from a…

Artificial Intelligence · Computer Science 2008-05-27 Vitaly Schetinin , Dayou Li , Carsten Maple

Multidimensional scaling (MDS) is the act of embedding proximity information about a set of $n$ objects in $d$-dimensional Euclidean space. As originally conceived by the psychometric community, MDS was concerned with embedding a fixed set…

Machine Learning · Statistics 2024-12-12 Michael W. Trosset , Carey E. Priebe

Recently, deep clustering, which is able to perform feature learning that favors clustering tasks via deep neural networks, has achieved remarkable performance in image clustering applications. However, the existing deep clustering…

Machine Learning · Computer Science 2018-12-12 Yazhou Ren , Ni Wang , Mingxia Li , Zenglin Xu

The clustering of autonomous driving scenario data can substantially benefit the autonomous driving validation and simulation systems by improving the simulation tests' completeness and fidelity. This article proposes a comprehensive data…

Computer Vision and Pattern Recognition · Computer Science 2021-03-31 Jinxin Zhao , Jin Fang , Zhixian Ye , Liangjun Zhang

The rise in data has led to the need for dimension reduction techniques, especially in the area of non-scalar variables, including time series, natural language processing, and computer vision. In this paper, we specifically investigate…

Machine Learning · Computer Science 2023-05-04 Aniruddha Rajendra Rao , Haiyan Wang , Chetan Gupta

Autoencoders gained popularity in the deep learning revolution given their ability to compress data and provide dimensionality reduction. Although prominent deep learning methods have been used to enhance autoencoders, the need to provide…

Machine Learning · Computer Science 2022-04-29 Rohitash Chandra , Mahir Jain , Manavendra Maharana , Pavel N. Krivitsky

We introduce Joint Multidimensional Scaling, a novel approach for unsupervised manifold alignment, which maps datasets from two different domains, without any known correspondences between data instances across the datasets, to a common…

Machine Learning · Statistics 2023-02-17 Dexiong Chen , Bowen Fan , Carlos Oliver , Karsten Borgwardt

Domain adaptation aims to exploit the knowledge in source domain to promote the learning tasks in target domain, which plays a critical role in real-world applications. Recently, lots of deep learning approaches based on autoencoders have…

Machine Learning · Computer Science 2019-11-01 Shuai Yang , Hao Wang , Yuhong Zhang , Pei-Pei Li , Yi Zhu , Xuegang Hu

The commonly used latent space embedding techniques, such as Principal Component Analysis, Factor Analysis, and manifold learning techniques, are typically used for learning effective representations of homogeneous data. However, they do…

Machine Learning · Computer Science 2021-10-04 Yasin Yilmaz , Mehmet Aktukmak , Alfred O. Hero

We propose a multifidelity dimension reduction method to identify a low-dimensional structure present in many engineering models. The structure of interest arises when functions vary primarily on a low-dimensional subspace of the…

Numerical Analysis · Mathematics 2020-01-08 Rémi Lam , Olivier Zahm , Youssef Marzouk , Karen Willcox

Dimension reduction (DR) algorithms have proven to be extremely useful for gaining insight into large-scale high-dimensional datasets, particularly finding clusters in transcriptomic data. The initial phase of these DR methods often…

Machine Learning · Computer Science 2025-10-15 Yingfan Wang , Yiyang Sun , Haiyang Huang , Cynthia Rudin

Transcriptional profiling on microarrays to obtain gene expressions has been used to facilitate cancer diagnosis. We propose a deep generative machine learning architecture (called DeepCancer) that learn features from unlabeled microarray…

Artificial Intelligence · Computer Science 2016-12-14 Rajendra Rana Bhat , Vivek Viswanath , Xiaolin Li

We propose a data segmentation methodology for the high-dimensional linear regression problem where regression parameters are allowed to undergo multiple changes. The proposed methodology, MOSEG, proceeds in two stages: first, the data are…

Methodology · Statistics 2023-11-02 Haeran Cho , Dom Owens

Over the past years, the ever-growing trend on data storage demand, more specifically for "cold" data (rarely accessed data), has motivated research for alternative systems of data storage. Because of its biochemical characteristics,…

Machine Learning · Computer Science 2022-03-21 Xavier Pic , Marc Antonini