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Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

Data Structures and Algorithms · Computer Science 2016-08-03 Paweł Gawrychowski , Tomasz Kociumaka

The fully-functional succinct tree representation of Navarro and Sadakane (ACM Transactions on Algorithms, 2014) supports a large number of operations in constant time using $2n+o(n)$ bits. However, the full idea is hard to implement. Only…

Data Structures and Algorithms · Computer Science 2016-03-24 Joshimar Cordova , Gonzalo Navarro

The notions of synchronizing and partitioning sets are recently introduced variants of locally consistent parsings with great potential in problem-solving. In this paper we propose a deterministic algorithm that constructs for a given…

Data Structures and Algorithms · Computer Science 2024-04-23 Dmitry Kosolobov , Nikita Sivukhin

We propose new succinct representations of ordinal trees, which have been studied extensively. It is known that any $n$-node static tree can be represented in $2n + o(n)$ bits and a number of operations on the tree can be supported in…

Data Structures and Algorithms · Computer Science 2010-09-27 Gonzalo Navarro , Kunihiko Sadakane

We show how to build several data structures of central importance to string processing, taking as input the Burrows-Wheeler transform (BWT) and using small extra working space. Let $n$ be the text length and $\sigma$ be the alphabet size.…

Data Structures and Algorithms · Computer Science 2019-08-14 Nicola Prezza , Giovanna Rosone

B-slack trees, a subclass of B-trees that have substantially better worst-case space complexity, are introduced. They store $n$ keys in height $O(\log_b n)$, where $b$ is the maximum node degree. Updates can be performed in $O(\log_{\frac b…

Data Structures and Algorithms · Computer Science 2017-12-18 Trevor Brown

We consider an index data structure for similar strings. The generalized suffix tree can be a solution for this. The generalized suffix tree of two strings $A$ and $B$ is a compacted trie representing all suffixes in $A$ and $B$. It has…

Data Structures and Algorithms · Computer Science 2013-05-09 Joong Chae Na , Heejin Park , Maxime Crochemore , Jan Holub , Costas S. Iliopoulos , Laurent Mouchard , Kunsoo Park

We consider the problem of constructing a sparse suffix tree (or suffix array) for $b$ suffixes of a given text $T$ of size $n$, using only $O(b)$ words of space during construction time. Breaking the naive bound of $\Omega(nb)$ time for…

Data Structures and Algorithms · Computer Science 2012-07-06 Philip Bille , Inge Li Gørtz , Tsvi Kopelowitz , Benjamin Sach , Hjalte Wedel Vildhøj

We observe that a standard transformation between \emph{ordinal} trees (arbitrary rooted trees with ordered children) and binary trees leads to interesting succinct binary tree representations. There are four symmetric versions of these…

Data Structures and Algorithms · Computer Science 2014-10-21 Pooya Davoodi , Rajeev Raman , Srinivasa Rao Satti

In this paper, we present a new data structure called the packed compact trie (packed c-trie) which stores a set $S$ of $k$ strings of total length $n$ in $n \log\sigma + O(k \log n)$ bits of space and supports fast pattern matching queries…

Data Structures and Algorithms · Computer Science 2017-10-11 Takuya Takagi , Shunsuke Inenaga , Kunihiko Sadakane , Hiroki Arimura

Packing several characters into one computer word is a simple and natural way to compress the representation of a string and to speed up its processing. Exploiting this idea, we propose an index for a packed string, based on a {\em sparse…

Data Structures and Algorithms · Computer Science 2015-03-19 Roman Kolpakov , Gregory Kucherov , Tatiana Starikovskaya

Let $A$ be a static array storing $n$ elements from a totally ordered set. We present a data structure of optimal size at most $n\log_2(3+2\sqrt{2})+o(n)$ bits that allows us to answer the following queries on $A$ in constant time, without…

Data Structures and Algorithms · Computer Science 2011-02-03 Johannes Fischer

We consider the {\it indexable dictionary} problem, which consists of storing a set $S \subseteq \{0,...,m-1\}$ for some integer $m$, while supporting the operations of $\Rank(x)$, which returns the number of elements in $S$ that are less…

Data Structures and Algorithms · Computer Science 2011-08-10 Rajeev Raman , Venkatesh Raman , Srinivasa Rao Satti

We propose a new succinct representation of labeled trees which represents a tree T using |T|H_k(T) number of bits (plus some smaller order terms), where |T|H_k(T) denotes the k-th order (tree label) entropy, as defined by Ferragina at al.…

Data Structures and Algorithms · Computer Science 2018-07-18 Michał Gańczorz

We prove that longest common prefix (LCP) information can be stored in much less space than previously known. More precisely, we show that in the presence of the text and the suffix array, o(n) additional bits are sufficient to answer…

Data Structures and Algorithms · Computer Science 2010-02-19 Johannes Fischer

We consider the well-studied partial sums problem in succint space where one is to maintain an array of n k-bit integers subject to updates such that partial sums queries can be efficiently answered. We present two succint versions of the…

Data Structures and Algorithms · Computer Science 2017-06-01 Philip Bille , Anders Roy Christiansen , Nicola Prezza , Frederik Rye Skjoldjensen

The suffix array and the suffix tree are the two most fundamental data structures for string processing. For a length-$n$ text, however, they use $\Theta(n \log n)$ bits of space, which is often too costly. To address this, Grossi and…

Data Structures and Algorithms · Computer Science 2023-04-20 Dominik Kempa , Tomasz Kociumaka

This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…

Data Structures and Algorithms · Computer Science 2013-06-04 Amihood Amir , Gianni Franceschini , Roberto Grossi , Tsvi Kopelowitz , Moshe Lewenstein , Noa Lewenstein

Succinct data structures give space-efficient representations of large amounts of data without sacrificing performance. They rely one cleverly designed data representations and algorithms. We present here the formalization in Coq/SSReflect…

Programming Languages · Computer Science 2019-07-03 Reynald Affeldt , Jacques Garrigue , Xuanrui Qi , Kazunari Tanaka

We suggest a new non-recursive algorithm for constructing a binary search tree given an array of numbers. The algorithm has $O(N)$ time and $O(1)$ memory complexity if the given array of $N$ numbers is sorted. The resulting tree is of…

Data Structures and Algorithms · Computer Science 2022-07-20 Pavel S. Ruzankin
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