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Researchers have pursued neurosymbolic artificial intelligence (AI) applications for nearly three decades. A marriage of the neural and symbolic components can lead to rapid advancements in AI. Yet, the field has not realized this promise…

Artificial Intelligence · Computer Science 2026-05-12 Margarita Belova , Jiaxin Xiao , Shikhar Tuli , Niraj K. Jha

Recent work at the intersection of formal language theory and graph theory has explored graph grammars for graph modeling. However, existing models and formalisms can only operate on homogeneous (i.e., untyped or unattributed) graphs. We…

Social and Information Networks · Computer Science 2023-01-06 Satyaki Sikdar , Neil Shah , Tim Weninger

Knowledge Graphs (KG) constitute a flexible representation of complex relationships between entities particularly useful for biomedical data. These KG, however, are very sparse with many missing edges (facts) and the visualisation of the…

Artificial Intelligence · Computer Science 2016-12-08 Armando Vieira

Precise recognition of search intent in Retrieval-Augmented Generation (RAG) systems remains a challenging goal, especially under resource constraints and for complex queries with nested structures and dependencies. This paper presents…

Computation and Language · Computer Science 2025-05-20 Yuyao Zhang , Zhicheng Dou , Xiaoxi Li , Jiajie Jin , Yongkang Wu , Zhonghua Li , Qi Ye , Ji-Rong Wen

Temporal knowledge graph question answering (TKGQA) poses a significant challenge task, due to the temporal constraints hidden in questions and the answers sought from dynamic structured knowledge. Although large language models (LLMs) have…

Computation and Language · Computer Science 2024-07-25 Yifu Gao , Linbo Qiao , Zhigang Kan , Zhihua Wen , Yongquan He , Dongsheng Li

The generalization ability of Convolutional neural networks (CNNs) for biometrics drops greatly due to the adverse effects of various occlusions. To this end, we propose a novel unified framework integrated the merits of both CNNs and…

Computer Vision and Pattern Recognition · Computer Science 2020-09-15 Min Ren , Yunlong Wang , Zhenan Sun , Tieniu Tan

Stochastic process-based molecular graph generators have become the state of the art for template-free single-step retrosynthesis. However, these models are typically trained only on product-reactant pairs, thereby acquiring…

Machine Learning · Computer Science 2026-05-26 Jiahai Huang , Anjie Qiao , Zhen Wang , Defu Lian , Yutong Lu

Graph-based Sequential Recommender systems (GSRs) have gained significant research attention due to their ability to simultaneously handle user-item interactions and sequential relationships between items. Current GSRs often utilize…

Information Retrieval · Computer Science 2025-03-05 Jinyu Zhang , Chao Li , Zhongying Zhao

Knowledge Graph Question Answering (KGQA) aims to interpret natural language queries and perform structured reasoning over knowledge graphs by leveraging their relational and semantic structures to retrieve accurate answers. Existing…

Computation and Language · Computer Science 2025-09-29 Yingxu Wang , Shiqi Fan , Mengzhu Wang , Siyang Gao , Chao Wang , Nan Yin

We propose a novel subgraph image representation for classification of network fragments with the targets being their parent networks. The graph image representation is based on 2D image embeddings of adjacency matrices. We use this image…

Computer Vision and Pattern Recognition · Computer Science 2018-04-18 Kshiteesh Hegde , Malik Magdon-Ismail , Ram Ramanathan , Bishal Thapa

The ability to capture complex linguistic structures and long-term dependencies among words in the passage is essential for discourse-level relation extraction (DRE) tasks. Graph neural networks (GNNs), one of the methods to encode…

Computation and Language · Computer Science 2021-11-16 I-Hung Hsu , Xiao Guo , Premkumar Natarajan , Nanyun Peng

Alternating Direction Method of Multipliers (ADMM) has recently been proposed as a potential alternative optimizer to the Stochastic Gradient Descent(SGD) for deep learning problems. This is because ADMM can solve gradient vanishing and…

Optimization and Control · Mathematics 2021-06-24 Junxiang Wang , Zheng Chai , Yue Cheng , Liang Zhao

Both graph structures and textual information play a critical role in Knowledge Graph Completion (KGC). With the success of Pre-trained Language Models (PLMs) such as BERT, they have been applied for text encoding for KGC. However, the…

Computation and Language · Computer Science 2025-01-06 Yuxia Geng , Jiaoyan Chen , Yuhang Zeng , Zhuo Chen , Wen Zhang , Jeff Z. Pan , Yuxiang Wang , Xiaoliang Xu

We argue that Transformers are essentially graph-to-graph models, with sequences just being a special case. Attention weights are functionally equivalent to graph edges. Our Graph-to-Graph Transformer architecture makes this ability…

Computation and Language · Computer Science 2023-10-30 James Henderson , Alireza Mohammadshahi , Andrei C. Coman , Lesly Miculicich

Distilling high-accuracy Graph Neural Networks (GNNs) to low-latency multilayer perceptions (MLPs) on graph tasks has become a hot research topic. However, conventional MLP learning relies almost exclusively on graph nodes and fails to…

Machine Learning · Computer Science 2024-12-10 Taiqiang Wu , Zhe Zhao , Jiahao Wang , Xingyu Bai , Lei Wang , Ngai Wong , Yujiu Yang

GNN-based methods have achieved excellent results as a mainstream task in drug response prediction tasks in recent years. Traditional GNN methods use only the atoms in a drug molecule as nodes to obtain the representation of the molecular…

Biomolecules · Quantitative Biology 2024-12-12 Kun Li , Jia Wu , Bo Du , Sergey V. Petoukhov , Huiting Xu , Zheman Xiao , Wenbin Hu

Concept-Based Models (CBMs) are a class of deep learning models that provide interpretability by explaining predictions through high-level concepts. These models first predict concepts and then use them to perform a downstream task.…

Machine Learning · Computer Science 2025-06-27 David Debot , Pietro Barbiero , Gabriele Dominici , Giuseppe Marra

Dynamic Mode Decomposition (DMD) is a data based modeling tool that identifies a matrix to map a quantity at some time instant to the same quantity in future. We design a new version which we call Adaptive Dynamic Mode Decomposition (ADMD)…

Signal Processing · Electrical Eng. & Systems 2020-12-16 Mohammad N. Murshed , M. Monir Uddin

Tiered graph autoencoders provide the architecture and mechanisms for learning tiered latent representations and latent spaces for molecular graphs that explicitly represent and utilize groups (e.g., functional groups). This enables the…

Machine Learning · Computer Science 2021-07-02 Daniel T. Chang

Transition-based parsers for Abstract Meaning Representation (AMR) rely on node-to-word alignments. These alignments are learned separately from parser training and require a complex pipeline of rule-based components, pre-processing, and…

Computation and Language · Computer Science 2022-05-04 Andrew Drozdov , Jiawei Zhou , Radu Florian , Andrew McCallum , Tahira Naseem , Yoon Kim , Ramon Fernandez Astudillo
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