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Related papers: Syntactic structures and the general Markov models

200 papers

Markov chain Monte Carlo algorithms play a key role in the Bayesian approach to phylogenetic inference. In this paper, we present the first theoretical work analyzing the rate of convergence of several Markov chains widely used in…

Populations and Evolution · Quantitative Biology 2007-05-23 Elchanan Mossel , Eric Vigoda

The syntactic topic model (STM) is a Bayesian nonparametric model of language that discovers latent distributions of words (topics) that are both semantically and syntactically coherent. The STM models dependency parsed corpora where…

Computation and Language · Computer Science 2010-03-04 Jordan Boyd-Graber , David M. Blei

Fixed tree topologies are widely used in phylodynamic analyses to reduce computational burden, yet the consequences of this assumption remain insufficiently understood. Here, we systematically assess the impact of various fixed-topology…

Populations and Evolution · Quantitative Biology 2025-12-01 Mathieu Fourment , Jiansi Gao , Marc A Suchard , Frederick A Matsen

Deep neural networks for machine comprehension typically utilizes only word or character embeddings without explicitly taking advantage of structured linguistic information such as constituency trees and dependency trees. In this paper, we…

Computation and Language · Computer Science 2017-09-04 Rui Liu , Junjie Hu , Wei Wei , Zi Yang , Eric Nyberg

It is possible to consider stochastic models of sequence evolution in phylogenetics in the context of a dynamical tensor description inspired from physics. Approaching the problem in this framework allows for the well developed methods of…

Populations and Evolution · Quantitative Biology 2007-05-23 J. G. Sumner , P. D. Jarvis

Recent work has demonstrated that neural language models encode syntactic structures in their internal representations, yet the derivations by which these structures are constructed across layers remain poorly understood. In this paper, we…

Computation and Language · Computer Science 2025-06-30 Taiga Someya , Ryo Yoshida , Hitomi Yanaka , Yohei Oseki

Neural networks trained on natural language processing tasks capture syntax even though it is not provided as a supervision signal. This indicates that syntactic analysis is essential to the understating of language in artificial…

Computation and Language · Computer Science 2020-10-05 Tomasz Limisiewicz , David Mareček

Understanding which information is encoded in deep models of spoken and written language has been the focus of much research in recent years, as it is crucial for debugging and improving these architectures. Most previous work has focused…

Computation and Language · Computer Science 2023-10-12 Gaofei Shen , Afra Alishahi , Arianna Bisazza , Grzegorz Chrupała

Life on earth is distinguished by long-lived correlations in time. The patterns of material organization that characterize living organisms today are contingent on events that occurred billions of years ago. This contingency is a necessary…

Soft Condensed Matter · Physics 2021-01-06 Peter M. Tzelios , Kyle J. M. Bishop

In a recent study, Bryant, Francis and Steel investigated the concept of \enquote{future-proofing} consensus methods in phylogenetics. That is, they investigated if such methods can be robust against the introduction of additional data like…

Populations and Evolution · Quantitative Biology 2025-01-31 Mareike Fischer , Michael Hendriksen

Structural information of phylogenetic tree topologies plays an important role in phylogenetic inference. However, finding appropriate topological structures for specific phylogenetic inference tasks often requires significant design effort…

Machine Learning · Statistics 2023-02-20 Cheng Zhang

Originally formalized with symbolic representations, syntactic trees may also be effectively represented in the activations of large language models (LLMs). Indeed, a 'Structural Probe' can find a subspace of neural activations, where…

Computation and Language · Computer Science 2024-12-10 Pablo Diego-Simón , Stéphane D'Ascoli , Emmanuel Chemla , Yair Lakretz , Jean-Rémi King

A rapidly growing body of research on compositional generalization investigates the ability of a semantic parser to dynamically recombine linguistic elements seen in training into unseen sequences. We present a systematic comparison of…

Computation and Language · Computer Science 2022-02-25 Pia Weißenhorn , Yuekun Yao , Lucia Donatelli , Alexander Koller

Syntactic elements, such as word order and case markers, are fundamental in natural language processing. Recent studies show that syntactic information boosts language model performance and offers clues for people to understand their…

Computation and Language · Computer Science 2024-07-15 Jong Myoung Kim , Young-Jun Lee , Yong-jin Han , Sangkeun Jung , Ho-Jin Choi

We consider the problem of mining signal temporal logical requirements from a dataset of regular (good) and anomalous (bad) trajectories of a dynamical system. We assume the training set to be labeled by human experts and that we have…

Artificial Intelligence · Computer Science 2018-08-02 Laura Nenzi , Simone Silvetti , Ezio Bartocci , Luca Bortolussi

Synthetic data becomes crucial for large language model training, but its effectiveness is highly inconsistent. We provide an information-theoretic account of this inconsistency: synthetic data improves a model only when the…

Machine Learning · Computer Science 2026-05-19 Hanyu Li , Zhengqi Sun , Xiaotie Deng

Word representations induced from models with discrete latent variables (e.g.\ HMMs) have been shown to be beneficial in many NLP applications. In this work, we exploit labeled syntactic dependency trees and formalize the induction problem…

Computation and Language · Computer Science 2016-02-08 Simon Šuster , Gertjan van Noord , Ivan Titov

The reconstruction of phylogenetic trees from molecular sequence data relies on modelling site substitutions by a Markov process, or a mixture of such processes. In general, allowing mixed processes can result in different tree topologies…

Populations and Evolution · Quantitative Biology 2016-09-07 Marta Casanellas , Mike Steel

Historical linguistics aims at inferring the most likely language phylogenetic tree starting from information concerning the evolutionary relatedness of languages. The available information are typically lists of homologous (lexical,…

Physics and Society · Physics 2015-05-27 Simone Pompei , Vittorio Loreto , Francesca Tria

Syntactic bootstrapping (Gleitman, 1990) is the hypothesis that children use the syntactic environments in which a verb occurs to learn its meaning. In this paper, we examine whether large language models exhibit a similar behavior. We do…

Computation and Language · Computer Science 2025-08-19 Xiaomeng Zhu , R. Thomas McCoy , Robert Frank