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We study the effect of topology variation on the dynamic behavior of a system with local update rules. We implement one-dimensional binary cellular automata on graphs with various topologies by formulating two sets of degree-dependent…

Statistical Mechanics · Physics 2009-11-11 Carsten Marr , Marc-Thorsten Huett

Changes in an animal's behavioral state, such as arousal and movements, induce {complex modulations of the baseline input currents to sensory areas, eliciting sensory modality-specific effects. A simple computational principle explaining…

Neurons and Cognition · Quantitative Biology 2023-06-06 Shun Ogawa , Francesco Fumarola , Luca Mazzucato

The lack of studying the complex organization of directed network usually limits to the understanding of underlying relationship between network structures and functions. Structural controllability and structural predictability, two…

Physics and Society · Physics 2022-03-31 Fei Jing , Chuang Liu , Jian-Liang Wu , Zi-Ke Zhang

An important idea in neural information processing is the communication-through-coherence hypothesis, according to which communication between two brain regions is effective only if they are phase-locked. Also of importance is neuronal…

The network density matrix formalism allows for describing the dynamics of information on top of complex structures and it has been successfully used to analyze from system's robustness to perturbations to coarse graining multilayer…

Physics and Society · Physics 2023-05-03 Arsham Ghavasieh , Manlio De Domenico

The brain has the phenomenal ability to reorganize itself by forming new connections among neurons and by pruning others. The so-called neural or brain plasticity facilitates the modification of brain structure and function over different…

Structure entails function and thus a structural description of the brain will help to understand its function and may provide insights into many properties of brain systems, from their robustness and recovery from damage, to their dynamics…

Neurons and Cognition · Quantitative Biology 2008-08-27 Marcus Kaiser , Robert Martin , Peter Andras , Malcolm P. Young

Structural modularity is a pervasive feature of biological neural networks, which have been linked to several functional and computational advantages. Yet, the use of modular architectures in artificial neural networks has been relatively…

Neural and Evolutionary Computing · Computer Science 2024-06-11 Mani Hamidi , Sina Khajehabdollahi , Emmanouil Giannakakis , Tim Schäfer , Anna Levina , Charley M. Wu

The complex dynamics of gene expression in living cells can be well-approximated using Boolean networks. The average sensitivity is a natural measure of stability in these systems: values below one indicate typically stable dynamics…

Molecular Networks · Quantitative Biology 2018-10-03 Bryan C. Daniels , Hyunju Kim , Douglas Moore , Siyu Zhou , Harrison Smith , Bradley Karas , Stuart A. Kauffman , Sara I. Walker

Plasticity is a fundamental property of complex systems, such as the brain or an organism. Yet it typically remains a descriptive concept inferred retrospectively from observed outcomes, such as modifications in activity or morphology.…

Neurons and Cognition · Quantitative Biology 2026-03-27 Igor Branchi

Weighted scale-free networks with topology-dependent interactions are studied. It is shown that the possible universality classes of critical behaviour, which are known to depend on topology, can also be explored by tuning the form of the…

Novel imaging and neurostimulation techniques open doors for advancements in closed-loop control of activity in biological neural networks. This would allow for applications in the investigation of activity propagation, and for diagnosis…

Neurons and Cognition · Quantitative Biology 2024-09-30 Laurens Engwegen , Daan Brinks , Wendelin Böhmer

The perceived risk and reward for a given situation can vary depending on resource availability, accumulated wealth, and other extrinsic factors such as individual backgrounds. Based on this general aspect of everyday life, here we use…

Statistical Mechanics · Physics 2021-12-07 Marco A. Amaral , Marcelo M. de Oliveira

While the support for the relevance of critical dynamics to brain function is increasing, there is much less agreement on the exact nature of the advocated critical point. Thus, a considerable number of theoretical efforts are currently…

Disordered Systems and Neural Networks · Physics 2024-01-01 Joaquin Almeira , Tomas S. Grigera , Dante R. Chialvo , Sergio A. Cannas

The rapid advances in artificial intelligence (AI) have largely been driven by scaling deep neural networks (DNNs) - increasing model size, data, and computational resources. Yet performance is ultimately governed by network dynamics. The…

Neurons and Cognition · Quantitative Biology 2026-02-23 Simon Vock , Christian Meisel

Criticality has been proposed as a mechanism for the emergence of complexity, life, and computation, as it exhibits a balance between robustness and adaptability. In classic models of complex systems where structure and dynamics are…

Statistical Mechanics · Physics 2026-02-04 Fernanda Sánchez-Puig , Octavio Zapata , Omar K. Pineda , Gerardo Iñiguez , Carlos Gershenson

Mitochondrial networks exhibit a variety of complex behaviors, including coordinated cell-wide oscillations of energy states as well as a phase transition (depolarization) in response to oxidative stress. Since functional and structural…

Novel experimental techniques reveal the simultaneous activity of larger and larger numbers of neurons. As a result there is increasing interest in the structure of cooperative -- or correlated -- activity in neural populations, and in the…

Neurons and Cognition · Quantitative Biology 2015-05-30 James Trousdale , Yu Hu , Eric Shea-Brown , Krešimir Josić

A reflection of our ultimate understanding of a complex system is our ability to control its behavior. Typically, control has multiple prerequisites: It requires an accurate map of the network that governs the interactions between the…

Systems and Control · Computer Science 2016-09-21 Yang-Yu Liu , Albert-Laszló Barabási

Networks of excitable nodes have recently attracted much attention particularly in regards to neuronal dynamics, where criticality has been argued to be a fundamental property. Refractory behavior, which limits the excitability of neurons…

Disordered Systems and Neural Networks · Physics 2018-10-22 S. Amin Moosavi , Afshin Montakhab , Alireza Valizadeh