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We consider the problem of constructing an an optimal-weight tree from the 3*(n choose 4) weighted quartet topologies on n objects, where optimality means that the summed weight of the embedded quartet topologiesis optimal (so it can be the…

Data Structures and Algorithms · Computer Science 2011-11-09 Rudi Cilibrasi , Paul M. B. Vitanyi

We address the classical problem of hierarchical clustering, but in a framework where one does not have access to a representation of the objects or their pairwise similarities. Instead, we assume that only a set of comparisons between…

Machine Learning · Statistics 2019-06-13 Debarghya Ghoshdastidar , Michaël Perrot , Ulrike von Luxburg

In this paper, we study a number of well-known combinatorial optimization problems that fit in the following paradigm: the input is a collection of (potentially inconsistent) local relationships between the elements of a ground set (e.g.,…

Data Structures and Algorithms · Computer Science 2021-02-24 Vaggos Chatziafratis , Mohammad Mahdian , Sara Ahmadian

We consider the classic correlation clustering problem in the hierarchical setting. Given a complete graph $G=(V,E)$ and $\ell$ layers of input information, where the input of each layer consists of a nonnegative weight and a labeling of…

Data Structures and Algorithms · Computer Science 2025-04-10 Hyung-Chan An , Mong-Jen Kao , Changyeol Lee , Mu-Ting Lee

We survey agglomerative hierarchical clustering algorithms and discuss efficient implementations that are available in R and other software environments. We look at hierarchical self-organizing maps, and mixture models. We review grid-based…

Information Retrieval · Computer Science 2011-05-03 Fionn Murtagh , Pedro Contreras

Hierarchical clustering (HC) is an important data analysis technique in which the goal is to recursively partition a dataset into a tree-like structure while grouping together similar data points at each level of granularity. Unfortunately,…

Data Structures and Algorithms · Computer Science 2025-06-09 Vladimir Braverman , Jon C. Ergun , Chen Wang , Samson Zhou

In many applications of clustering (for example, ontologies or clusterings of animal or plant species), hierarchical clusterings are more descriptive than a flat clustering. A hierarchical clustering over $n$ elements is represented by a…

Data Structures and Algorithms · Computer Science 2018-04-18 Ehsan Emamjomeh-Zadeh , David Kempe

Hierarchical clustering studies a recursive partition of a data set into clusters of successively smaller size, and is a fundamental problem in data analysis. In this work we study the cost function for hierarchical clustering introduced by…

Data Structures and Algorithms · Computer Science 2021-12-17 Bogdan-Adrian Manghiuc , He Sun

Agglomerative hierarchical clustering (AHC) requires only the similarity between objects to be known. This is attractive when clustering signals of varying length, such as speech, which are not readily represented in fixed-dimensional…

Machine Learning · Computer Science 2018-10-31 Lerato Lerato , Thomas Niesler

Clustering is an unsupervised machine learning task that consists of identifying groups of similar objects. It has numerous applications and is increasingly used in fairness-sensitive domains where objects represent individuals, such as…

Machine Learning · Computer Science 2026-05-14 Claudio Mantuano , Manuel Kammermann , Philipp Baumann

Hierarchical clustering is a common algorithm in data analysis. It is unique among many clustering algorithms in that it draws dendrograms based on the distance of data under a certain metric, and group them. It is widely used in all areas…

Instrumentation and Methods for Astrophysics · Physics 2022-11-14 Heng Yu , Xiaolan Hou

Hierarchical clustering is a class of algorithms that seeks to build a hierarchy of clusters. It has been the dominant approach to constructing embedded classification schemes since it outputs dendrograms, which capture the hierarchical…

Machine Learning · Statistics 2018-08-28 Xiaofei Ma , Satya Dhavala

A hierarchical scheme for clustering data is presented which applies to spaces with a high number of dimension ($N_{_{D}}>3$). The data set is first reduced to a smaller set of partitions (multi-dimensional bins). Multiple clustering…

Data Analysis, Statistics and Probability · Physics 2017-10-16 Kevin McIlhany , Stephen Wiggins

This paper explores hierarchical clustering in the case where pairs of points have dissimilarity scores (e.g. distances) as a part of the input. The recently introduced objective for points with dissimilarity scores results in every tree…

Machine Learning · Computer Science 2020-09-01 Benjamin Moseley , Yuyan Wang

We present an approach to model-based hierarchical clustering by formulating an objective function based on a Bayesian analysis. This model organizes the data into a cluster hierarchy while specifying a complex feature-set partitioning that…

Machine Learning · Computer Science 2013-01-18 Shivakumar Vaithyanathan , Byron E Dom

We study the cost function for hierarchical clusterings introduced by [arXiv:1510.05043] where hierarchies are treated as first-class objects rather than deriving their cost from projections into flat clusters. It was also shown in…

Machine Learning · Computer Science 2016-10-31 Aurko Roy , Sebastian Pokutta

Hierarchical Clustering (HC) is a widely studied problem in exploratory data analysis, usually tackled by simple agglomerative procedures like average-linkage, single-linkage or complete-linkage. In this paper we focus on two objectives,…

Data Structures and Algorithms · Computer Science 2018-08-08 Moses Charikar , Vaggos Chatziafratis , Rad Niazadeh

We propose a novel approach to the problem of clustering hierarchically aggregated time-series data, which has remained an understudied problem though it has several commercial applications. We first group time series at each aggregated…

Machine Learning · Computer Science 2022-05-30 Xing Han , Tongzheng Ren , Jing Hu , Joydeep Ghosh , Nhat Ho

Hierarchical clustering seeks to uncover nested structures in data by constructing a tree of clusters, where deeper levels reveal finer-grained relationships. Traditional methods, including linkage approaches, face three major limitations:…

Machine Learning · Computer Science 2025-11-25 Maximilien Dreveton , Matthias Grossglauser , Daichi Kuroda , Patrick Thiran

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer