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Although the performance of commodity computers has improved drastically with the introduction of multicore processors and GPU computing, the standard R distribution is still based on single-threaded model of computation, using only a small…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-21 Bogdan Oancea , Richard Pospisil

The numerical implementation of finite element discretization method for the stream function formulation of a linearized Navier-Stokes equations is considered. Algorithm 1 is applied using Argyris element. Three global orderings of nodes…

Numerical Analysis · Mathematics 2025-10-20 F. Fairag , N. Almulla

In atomistic spin dynamics simulations, the time cost of constructing the space- and time-displaced pair correlation function in real space increases quadratically as the number of spins $N$, leading to significant computational effort. The…

Computational Physics · Physics 2023-08-16 Hongwei Chen , Shiyang Chen , Joshua J. Turner , Adrian Feiguin

This paper studies rule-based blocking in Entity Resolution (ER). We propose HyperBlocker, a GPU-accelerated system for blocking in ER. As opposed to previous blocking algorithms and parallel blocking solvers, HyperBlocker employs a…

Databases · Computer Science 2024-12-16 Xiaoke Zhu , Min Xie , Ting Deng , Qi Zhang

Palabos-npFEM is a computational framework for the simulation of blood flow with fully resolved constituents. The software resolves the trajectories and deformed state of blood cells, such as red blood cells and platelets, and the complex…

Computational Physics · Physics 2021-07-22 Christos Kotsalos , Jonas Latt , Bastien Chopard

The study deals with the parallelization of 2D and 3D finite element based Navier-Stokes codes using direct solvers. Development of sparse direct solvers using multifrontal solvers has significantly reduced the computational time of direct…

Mathematical Software · Computer Science 2009-10-13 Mandhapati P. Raju

Faceted shapes, such as polyhedra, are commonly found in systems of nanoscale, colloidal, and granular particles. Many interesting physical phenomena, like crystal nucleation and growth, vacancy motion, and glassy dynamics are challenging…

Computational Physics · Physics 2017-03-08 Matthew Spellings , Ryan L. Marson , Joshua A. Anderson , Sharon C. Glotzer

The AFiD code, an open source solver for the incompressible Navier-Stokes equations ({\color{blue}\burl{http://www.afid.eu}}), has been ported to GPU clusters to tackle large-scale wall-bounded turbulent flow simulations. The GPU porting…

The goal of this paper is to create a fruitful bridge between the numerical methods for approximating partial differential equations (PDEs) in fluid dynamics and the (iterative) numerical methods for dealing with the resulting large linear…

Numerical Analysis · Mathematics 2016-12-15 M. Dumbser , F. Fambri , I. Furci , M. Mazza , M. Tavelli , S. Serra-Capizzano

In marine offshore engineering, cost-efficient simulation of unsteady water waves and their nonlinear interaction with bodies are important to address a broad range of engineering applications at increasing fidelity and scale. We consider a…

Numerical Analysis · Mathematics 2020-09-03 Allan P. Engsig-Karup , Wojciech Laskowski

We present GPU-SLS, a GPU-parallelized framework for safe, robust nonlinear model predictive control (MPC) that scales to high-dimensional uncertain robotic systems and long planning horizons. Our method jointly optimizes an…

Robotics · Computer Science 2026-04-10 Jeffrey Fang , Glen Chou

We present NAVIS (NAnochannel Velocity and thermal Interfacial Slip), a LAMMPS-Python scripted toolkit for computing the Navier (hydrodynamic) friction coefficient and Kapitza (thermal) resistance at arbitrary solid-fluid interfaces. NAVIS…

Soft Condensed Matter · Physics 2026-01-19 Sleeba Varghese , Sobin Alosious , Jesper Schmidt Hansen , Billy Dean Todd

The High Energy Physics (HEP) experiments, such as those at the Large Hadron Collider (LHC), traditionally consume large amounts of CPU cycles for detector simulations and data analysis, but rarely use compute accelerators such as GPUs. As…

High Energy Physics - Experiment · Physics 2022-03-17 Zhihua Dong , Heather Gray , Charles Leggett , Meifeng Lin , Vincent R. Pascuzzi , Kwangmin Yu

In this work we consider Runge-Kutta discontinuous Galerkin methods (RKDG) for the solution of hyperbolic equations enabling high order discretization in space and time. We aim at an efficient implementation of DG for Euler equations on…

Numerical Analysis · Mathematics 2021-04-12 M. Siebenborn , V. Schulz , S. Schmidt

We present an approach to molecular-dynamics simulations of ferrofluids on graphics processing units (GPUs). Our numerical scheme is based on a GPU-oriented modification of the Barnes-Hut (BH) algorithm designed to increase the parallelism…

Computational Physics · Physics 2013-04-30 A. Yu. Polyakov , T. V. Lyutyy , S. Denisov , V. V. Reva , P. Hanggi

We present a novel framework to explore neural control and design of complex fluidic systems with dynamic solid boundaries. Our system features a fast differentiable Navier-Stokes solver with solid-fluid interface handling, a…

Fluid Dynamics · Physics 2024-11-04 Yifei Li , Yuchen Sun , Pingchuan Ma , Eftychios Sifakis , Tao Du , Bo Zhu , Wojciech Matusik

Solving the Bhatnagar-Gross-Krook (BGK) equation with a stochastic particle approach enables efficient and flexible simulations of flows in the transition regime, between continuum and free molecular flow. However, the usual first-order…

Fluid Dynamics · Physics 2024-12-02 Marcel Pfeiffer , Félix Garmirian , Tobias Ott

In this paper a new scalable hydrodynamic code GPUPEGAS (GPU-accelerated PErformance Gas Astrophysic Simulation) for simulation of interacting galaxies is proposed. The code is based on combination of Godunov method as well as on the…

Instrumentation and Methods for Astrophysics · Physics 2013-11-06 Kulikov Igor

Current GPU-accelerated supercomputers promise to enable large-scale simulations of turbulent flows. Lattice Boltzmann Methods (LBM) are particularly well-suited to fulfilling this promise due to their intrinsic compatibility with highly…

Computational Physics · Physics 2025-06-30 Adrian Kummerländer , Fedor Bukreev , Yuji Shimojima , Shota Ito , Mathias J. Krause

For the first time, the actuator line model (ALM) and the immersed boundary method (IBM) are integrated into the high-order gas-kinetic scheme (GKS) to simulate the wind turbine with the nacelle and tower. The high-order GKS is extended to…

Fluid Dynamics · Physics 2026-03-13 Pengyu Huo , Liang Pan , Guiyu Cao , Baoqing Meng , Baolin Tian , Yubo Huang