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This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

Molecular communication is a novel approach for data transmission between miniaturized devices, especially in contexts where electrical signals are to be avoided. The communication is based on sending molecules (or other particles) at nano…

Emerging Technologies · Computer Science 2023-08-08 Max Bartunik , Jens Kirchner , Oliver Keszocze

Transport phenomena in parallel coupled scatterers are studied by transfer matrix formulism. We derive a simple recurrence relation for transfer matrix of one-dimensional two-terminal systems consisting of $N$ arbitrary scattering unit…

Quantum Physics · Physics 2016-12-09 Yu Jiang

Diffusion of colored dye on water saturated paper substrates has been traditionally exploited with great skill by renowned water color artists. The same physics finds more recent practical applications in paper based diagnostic devices…

Soft Condensed Matter · Physics 2020-02-27 Sankha Shuvra Das , Sumeet Kumar , Sambuddha Ghosal , Sandip Ghosal , Suman Chakraborty

Diffusive transport of small molecules within the internal structures of biological and synthetic material systems is complex because the crowded environment presents chemical and physical barriers to mobility. We explored this mobility…

Soft Condensed Matter · Physics 2020-09-29 Rajarshi Guha , Subhadip Ghosh , Darrell Velegol , Peter J. Butler , Ayusman Sen , Jennifer L. Ross

Neural channel decoder, as a data-driven channel decoding strategy, has shown very promising improvement on error-correcting capability over the classical methods. However, the success of those deep learning-based decoder comes at the cost…

Information Theory · Computer Science 2026-05-20 Chengwei Zhang , Yifan Du , Siyu Liao

We report a method to design at will the spatial profile of transmitted coherent light after propagation through a scattering sample. We compute an operator based on the experimentally measured transmission matrix, obtained by numerically…

In this paper, we design matched filters for diffusive molecular communication systems taking into account the following impairments: signal-dependent diffusion noise, inter-symbol interference (ISI), and external interfering molecules. The…

Information Theory · Computer Science 2017-05-05 Vahid Jamali , Arman Ahmadzadeh , Robert Schober

It has been shown recently that changing the fluidic properties of a drug can improve its efficacy in ablating solid tumors. We develop a modeling framework for tumor ablation, and present the simplest possible model for drug diffusion in a…

Cell Behavior · Quantitative Biology 2018-12-20 Aminur Rahman , Souparno Ghosh , Ranadip Pal

Molecular communication emerges as a promising communication paradigm for nanotechnology. However, solid mathematical foundations for information-theoretic analysis of molecular communication have not yet been built. In particular, no one…

Information Theory · Computer Science 2013-11-19 Ya-Ping Hsieh , Ping-Cheng Yeh

Mathematical modeling is an important theoretical tool which provides researchers with quantification of the permeability of dialyzing systems in renal replacement therapy. In the paper we provide a short review of the most successful…

Tissues and Organs · Quantitative Biology 2018-05-16 Marina V Voinova

Diffusion Models are probabilistic models that create realistic samples by simulating the diffusion process, gradually adding and removing noise from data. These models have gained popularity in domains such as image processing, speech…

Computer Vision and Pattern Recognition · Computer Science 2024-08-21 Md Manjurul Ahsan , Shivakumar Raman , Yingtao Liu , Zahed Siddique

The dynamics of a tracer particle in a glassy matrix of obstacles displays slow complex transport as the free volume approaches a critical value and the void space falls apart. We investigate the emerging subdiffusive motion of the test…

Statistical Mechanics · Physics 2011-01-20 Thomas Franosch , Markus Spanner , Teresa Bauer , Gerd E. Schröder-Turk , Felix Höfling

When several wireless users are sharing the spectrum, packet collision is a simple, yet widely used model for interference. Under this model, when transmitters cause interference at any of the receivers, their collided packets are discarded…

Information Theory · Computer Science 2016-11-17 Alireza Vahid , Mohammad Ali Maddah-Ali , A. Salman Avestimehr

Motivated by physical-layer network coding, this paper considers communication in multiplicative matrix channels over finite chain rings. Such channels are defined by the law $Y =A X$, where $X$ and $Y$ are the input and output matrices,…

Information Theory · Computer Science 2013-11-20 Roberto W. Nóbrega , Chen Feng , Danilo Silva , Bartolomeu F. Uchôa-Filho

We consider a two-level system coupled to a mesoscopic two-terminal conductor that acts as measuring device. As a convenient description of the conductor we introduce its scattering matrix. We show how its elements can be used to calculate…

Mesoscale and Nanoscale Physics · Physics 2009-11-07 M. Buttiker , S. Pilgram

Graph neural networks have recently achieved great successes in predicting quantum mechanical properties of molecules. These models represent a molecule as a graph using only the distance between atoms (nodes). They do not, however,…

Machine Learning · Computer Science 2022-04-06 Johannes Gasteiger , Janek Groß , Stephan Günnemann

A simple feedback control algorithm is presented for distributed beamforming in a wireless network. A network of wireless sensors that seek to cooperatively transmit a common message signal to a Base Station (BS) is considered. In this…

Information Theory · Computer Science 2007-07-16 R. Mudumbai , J. Hespanha , U. Madhow , G. Barriac

Dense packing of particles has provided important models to study the structure of matter in various systems such as liquid, glassy and crystalline phase, etc. The simplest sphere packing models are able to represent and capture salient…

Soft Condensed Matter · Physics 2023-03-03 Weihao Wang , Zhenghong Chen , Yang Gao , Yang Jiao , Shaodong Zhang

In this paper, we propose novel modulation techniques using isomers as messenger molecules for nano communication via diffusion. To evaluate achievable rate performance, we compare the proposed techniques with concentration-based and…

Quantitative Methods · Quantitative Biology 2012-01-05 Na-Rae Kim , Chan-Byoung Chae
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