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Reproducibility is central to the credibility of scientific findings, yet complete replication studies are costly and infrequent. However, many biological experiments contain internal replication, which is defined as repetition across…

Applications · Statistics 2025-06-05 Stanley E. Lazic

The past few years has witnessed the great success of recommender systems, which can significantly help users find relevant and interesting items for them in the information era. However, a vast class of researches in this area mainly focus…

Information Retrieval · Computer Science 2012-04-10 Xiao Hu , Chuibo Chen , Xiaolong Chen , Zi-Ke Zhang

We describe a unique environment in which undergraduate students from various STEM and social science disciplines are trained in data provenance and reproducible methods, and then apply that knowledge to real, conditionally accepted…

Computers and Society · Computer Science 2026-01-21 Lars Vilhuber , Hyuk Harry Son , Meredith Welch , David N. Wasser , Michael Darisse

Results of simulation studies evaluating the performance of statistical methods are often considered actionable and thus can have a major impact on the way empirical research is implemented. However, so far there is limited evidence about…

Research must be reproducible in order to make an impact on science and to contribute to the body of knowledge in our field. Yet studies have shown that 70% of research from academic labs cannot be reproduced. In software engineering, and…

Software Engineering · Computer Science 2018-04-10 Clinton Woodson , Jane Huffman Hayes , Sarah Griffioen

Feature selection is indispensable in microbiome data analysis, but it can be particularly challenging as microbiome data sets are high-dimensional, underdetermined, sparse and compositional. Great efforts have recently been made on…

Despite peer-reviewing being an essential component of academia since the 1600s, it has repeatedly received criticisms for lack of transparency and consistency. We posit that recent work in machine learning and explainable AI provide tools…

Computation and Language · Computer Science 2021-04-16 Panagiotis Fytas , Georgios Rizos , Lucia Specia

The design of algorithms that generate personalized ranked item lists is a central topic of research in the field of recommender systems. In the past few years, in particular, approaches based on deep learning (neural) techniques have…

Information Retrieval · Computer Science 2021-01-08 Maurizio Ferrari Dacrema , Simone Boglio , Paolo Cremonesi , Dietmar Jannach

A large body of work in behavioral fields attempts to develop models that describe the way people, as opposed to rational agents, make decisions. A recent Choice Prediction Competition (2015) challenged researchers to suggest a model that…

Machine Learning · Computer Science 2016-12-01 Gali Noti , Effi Levi , Yoav Kolumbus , Amit Daniely

Social Networking Sites (SNS) are one of the most important ways of communication. In particular, microblogging sites are being used as analysis avenues due to their peculiarities (promptness, short texts...). There are countless researches…

Social and Information Networks · Computer Science 2022-06-28 Manuel Francisco , Juan Luis Castro

Large Language Models have gained remarkable interest in industry and academia. The increasing interest in LLMs in academia is also reflected in the number of publications on this topic over the last years. For instance, alone 78 of the…

The high incidence of irreproducible research has led to urgent appeals for transparency and equitable practices in open science. For the scientific disciplines that rely on computationally intensive analyses of large data sets, a granular…

Graph-based techniques relying on neural networks and embeddings have gained attention as a way to develop Recommender Systems (RS) with several papers on the topic presented at SIGIR 2022 and 2023. Given the importance of ensuring that…

Information Retrieval · Computer Science 2026-03-30 Maurizio Ferrari Dacrema , Michael Benigni , Nicola Ferro

Recent studies have shown that the majority of published computational models in systems biology and physiology are not repeatable or reproducible. There are a variety of reasons for this. One of the most likely reasons is that given how…

Other Quantitative Biology · Quantitative Biology 2021-07-13 Herbert M. Sauro

This paper replicates and extends the system used in the AuTexTification 2023 shared task for authorship attribution of machine-generated texts. First, we tried to reproduce the original results. Exact replication was not possible because…

Computation and Language · Computer Science 2026-03-17 Adam Skurla , Dominik Macko , Jakub Simko

Predicting phenotypes from gene expression data is a crucial task in biomedical research, enabling insights into disease mechanisms, drug responses, and personalized medicine. Traditional machine learning and deep learning rely on…

Machine Learning · Computer Science 2025-09-18 Kevin Dradjat , Massinissa Hamidi , Pierre Bartet , Blaise Hanczar

There is considerable interest in developing techniques for predicting human behavior, for instance to enable emerging contentious situations to be forecast or the nature of ongoing but hidden activities to be inferred. A promising approach…

Social and Information Networks · Computer Science 2013-01-01 Richard Colbaugh , Kristin Glass , Travis Bauer

Semisupervised methods inevitably invoke some assumption that links the marginal distribution of the features to the regression function of the label. Most commonly, the cluster or manifold assumptions are used which imply that the…

Statistics Theory · Mathematics 2011-12-02 Martin Azizyan , Aarti Singh , Larry Wasserman

This is the first part of a small-scale explorative study in an effort to start assessing reproducibility issues specific to scientometrics research. This effort is motivated by the desire to generate empirical data to inform debates about…

Digital Libraries · Computer Science 2018-04-16 Ludo Waltman , Sybille Hinze , Andrea Scharnhorst , Jesper Wiborg Schneider , Theresa Velden

We performed a billion locality sensitive hash comparisons between artificially generated data samples to answer the critical question - can we reproduce the results of generative AI models? Reproducibility is one of the pillars of…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-07 Edward Kim , Isamu Isozaki , Naomi Sirkin , Michael Robson
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