Related papers: Ranking Bracelets in Polynomial Time

Unlabelled Necklaces are an equivalence class of cyclic words under both the rotation (cyclic shift) and the relabelling operations. The relabelling of a word is a bijective mapping from the alphabet to itself. The main result of the paper…

A necklace is an equivalence class of words of length $n$ over an alphabet under the cyclic shift (rotation) operation. As a classical object, there have been many algorithmic results for key operations on necklaces, including counting,…

We give efficient algorithms for ranking Lyndon words of length $n$ over an alphabet of size $\sigma$. The rank of a Lyndon word is its position in the sequence of lexicographically ordered Lyndon words of the same length. The outputs are…

We give subquadratic algorithms that, given two necklaces each with n beads at arbitrary positions, compute the optimal rotation of the necklaces to best align the beads. Here alignment is measured according to the p norm of the vector of…

Given a string $s$ of length $n$ over a general alphabet and an integer $k$, the problem is to decide whether $s$ is a concatenation of $k$ nonempty palindromes. Two previously known solutions for this problem work in time $O(kn)$ and…

We give an $\mathcal{O}(n \log n)$-time, $\mathcal{O}(n)$-space algorithm for factoring a string into the minimum number of palindromic substrings. That is, given a string $S [1..n]$, in $\mathcal{O}(n \log n)$ time our algorithm returns…

I present a single algorithm which solves the clique problems, "What is the largest size clique?", "What are all the maximal cliques?" and the decision problem, "Does a clique of size k exist?" for any given graph in polynomial time. The…

We investigate the complexity of several fundamental polynomial-time solvable problems on graphs and on matrices, when the given instance has low treewidth; in the case of matrices, we consider the treewidth of the graph formed by non-zero…

Here, we give an algorithm for deciding if the nonnegative rank of a matrix $M$ of dimension $m \times n$ is at most $r$ which runs in time $(nm)^{O(r^2)}$. This is the first exact algorithm that runs in time singly-exponential in $r$. This…

The problem of ranking can be described as follows. We have a set of combinatorial objects $S$, such as, say, the k-subsets of n things, and we can imagine that they have been arranged in some list, say lexicographically, and we want to…

We are interested in computing $k$ most preferred models of a given d-DNNF circuit $C$, where the preference relation is based on an algebraic structure called a monotone, totally ordered, semigroup $(K, \otimes, <)$. In our setting, every…

The $k$-cardinality assignment problem asks for finding a maximal (minimal) weight of a matching of cardinality $k$ in a weighted bipartite graph $K_{n,n}$, $k \leq n$. The algorithm of Gassner and Klinz from 2010 for the parametric…

We give reconstruction algorithms for subclasses of depth-3 arithmetic circuits. In particular, we obtain the first efficient algorithm for finding tensor rank, and an optimal tensor decomposition as a sum of rank-one tensors, when given…

We study the problem of indexing irreducible polynomials over finite fields, and give the first efficient algorithm for this problem. Specifically, we show the existence of poly(n, log q)-size circuits that compute a bijection between {1,…

For $n \geq 2$ we describe an $O(l^3n)$-time algorithm that determines if a length $l$ virtual braid word in the standard presentation of the virtual braid group ${\mathcal VB}_n$ represents the trivial virtual braid.

In this paper, we provide a polynomial time algorithm to calculate the probability of a {\it ranked} gene tree topology for a given species tree, where a ranked tree topology is a tree topology with the internal vertices being ordered. The…

We propose an algorithm for deciding whether a given braid is pseudo-Anosov, reducible, or periodic. The algorithm is based on Garside's weighted decomposition and is polynomial-time in the word-length of an input braid. Moreover, a…

This work concerns learning probabilistic models for ranking data in a heterogeneous population. The specific problem we study is learning the parameters of a Mallows Mixture Model. Despite being widely studied, current heuristics for this…

In this paper, we study the combinatorial set of RNA secondary structures of length $n$ with $m$ base-pairs. For a compact representation, we encode an RNA secondary structure by the corresponding Motzkin word. For this combinatorial set,…

For any $\ell > 0$, we present an algorithm which takes as input a semi-algebraic set, $S$, defined by $P_1 \leq 0,...,P_s \leq 0$, where each $P_i \in \R[X_1,...,X_k]$ has degree $\leq 2,$ and computes the top $\ell$ Betti numbers of $S$,…