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The AMIDER, Advanced Multidisciplinary Integrated-Database for Exploring new Research, is a newly developed research data catalog to demonstrate an advanced database application. AMIDER is characterized as a multidisciplinary database…

Accurate screening of cancer types is crucial for effective cancer detection and precise treatment selection. However, the association between gene expression profiles and tumors is often limited to a small number of biomarker genes. While…

Neural and Evolutionary Computing · Computer Science 2024-04-09 Xubin Wang , Yunhe Wang , Zhiqing Ma , Ka-Chun Wong , Xiangtao Li

Advances in technology and computing hardware are enabling scientists from all areas of science to produce massive amounts of data using large-scale simulations or observational facilities. In this era of data deluge, effective coordination…

Databases · Computer Science 2015-03-31 Spyros Blanas , Surendra Byna

The continuous expansion of open data platforms and research repositories has led to a fragmented dataset ecosystem, posing significant challenges for cross-source data discovery and interpretation. To address these challenges, we introduce…

Information Retrieval · Computer Science 2026-03-12 Kan Ling , Zhen Qin , Yichi Zhu , Hengrun Zhang , Huiqun Yu , Guisheng Fan

As the number of scientific publications and preprints is growing exponentially, several attempts have been made to navigate this complex and increasingly detailed landscape. These have almost exclusively taken unsupervised approaches that…

Data exploration and visualization systems are of great importance in the Big Data era. Exploring and visualizing very large datasets has become a major research challenge, of which scalability is a vital requirement. In this survey, we…

Human-Computer Interaction · Computer Science 2016-02-01 Nikos Bikakis , Timos Sellis

Deep learning models are increasingly data-hungry, requiring significant resources to collect and compile the datasets needed to train them, with Earth Observation (EO) models being no exception. However, the landscape of datasets in EO is…

Computer Vision and Pattern Recognition · Computer Science 2024-06-24 Alistair Francis , Mikolaj Czerkawski

Discovery of new knowledge is increasingly data-driven, predicated on a team's ability to collaboratively create, find, analyze, retrieve, and share pertinent datasets over the duration of an investigation. This is especially true in the…

Human-Computer Interaction · Computer Science 2021-10-06 Hongsuda Tangmunarunkit , Aref Shafaeibejestan , Joshua Chudy , Karl Czajkowski , Robert Schuler , Carl Kesselman

We describe the current state and future plans for a set of tools for scientific data management (SDM) designed to support scientific transparency and reproducible research. SDM has been in active use at our MRI Center for more than two…

Quantitative Methods · Quantitative Biology 2015-02-25 B. A. Wandell , A. Rokem , L. M. Perry , G. Schaefer , R. F. Dougherty

We present a system that constructs and maintains an up-to-date co-occurrence network of medical concepts based on continuously mining the latest biomedical literature. Users can explore this network visually via a concise online interface…

Information Retrieval · Computer Science 2015-03-20 Alexei Yavlinsky

End-to-end autonomous driving is a fully differentiable machine learning system that takes raw sensor input data and other metadata as prior information and directly outputs the ego vehicle's control signals or planned trajectories. This…

Robotics · Computer Science 2023-12-01 Apoorv Singh

While tumor dynamic modeling has been widely applied to support the development of oncology drugs, there remains a need to increase predictivity, enable personalized therapy, and improve decision-making. We propose the use of Tumor Dynamic…

Quantitative Methods · Quantitative Biology 2023-10-24 Mark Laurie , James Lu

The SQL-based exploratory data analysis has garnered significant attention within the data analysis community. The emergence of large language models (LLMs) has facilitated the paradigm shift from manual to automated data exploration.…

Large language models (LLMs) have rapidly evolved from text generators into powerful problem solvers. Yet, many open tasks demand critical thinking, multi-source, and verifiable outputs, which are beyond single-shot prompting or standard…

The rapid acceleration of scientific publishing has created substantial challenges for researchers attempting to discover, contextualize, and interpret relevant literature. Traditional keyword-based search systems provide limited semantic…

Information Retrieval · Computer Science 2025-12-16 Sina Jani , Arman Heidari , Amirmohammad Anvari , Zahra Rahimi

Decision mining enables the discovery of decision rules from event logs or streams, and constitutes an important part of in-depth analysis and optimisation of business processes. So far, decision mining has been merely applied in an ex-post…

Artificial Intelligence · Computer Science 2023-03-08 Beate Scheibel , Stefanie Rinderle-Ma

Astronomical researchers often think of analysis and visualization as separate tasks. In the case of high-dimensional data sets, though, interactive exploratory data visualization can give far more insight than an approach where data…

Instrumentation and Methods for Astrophysics · Physics 2015-06-05 Alyssa A. Goodman

Efficient explorative data analysis systems must take into account both what a user knows and wants to know. This paper proposes a principled framework for interactive visual exploration of relations in data, through views most informative…

Machine Learning · Statistics 2021-07-02 Kai Puolamäki , Emilia Oikarinen , Andreas Henelius

Modern cyber security operations collect an enormous amount of logging and alerting data. While analysts have the ability to query and compute simple statistics and plots from their data, current analytical tools are too simple to admit…

Cryptography and Security · Computer Science 2018-06-22 Robert A. Bridges , Maria A. Vincent , Kelly M. T. Huffer , John R. Goodall , Jessie D. Jamieson , Zachary Burch

The explosive growth of multimodal data - spanning text, image, video, spatial, and relational modalities, coupled with the need for real-time semantic search and retrieval over these data - has outpaced the capabilities of existing…

Databases · Computer Science 2025-09-25 Jingyi Yang , Songsong Mo , Jiachen Shi , Zihao Yu , Kunhao Shi , Xuchen Ding , Gao Cong