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The training of graph neural networks (GNNs) is extremely time consuming because sparse graph-based operations are hard to be accelerated by hardware. Prior art explores trading off the computational precision to reduce the time complexity…

Machine Learning · Computer Science 2023-07-04 Zirui Liu , Shengyuan Chen , Kaixiong Zhou , Daochen Zha , Xiao Huang , Xia Hu

Surgical instrument segmentation (SIS) on endoscopic images stands as a long-standing and essential task in the context of computer-assisted interventions for boosting minimally invasive surgery. Given the recent surge of deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-11-08 Mingyu Sheng , Jianan Fan , Dongnan Liu , Ron Kikinis , Weidong Cai

We aim to learn a sparse and connected graph from sparse data, where the number of observations K can be substantially smaller than the signal dimension N for signals x in R^N, and the underlying distribution is unknown. In this severely…

Signal Processing · Electrical Eng. & Systems 2026-04-30 Bahar Oveisgharan , Gene Cheung , Andrew Eckford

Graph neural networks have been successful for machine learning, as well as for combinatorial and graph problems such as the Subgraph Isomorphism Problem and the Traveling Salesman Problem. We describe an approach for computing graph…

Machine Learning · Computer Science 2023-11-20 Alvin Chiu , Mithun Ghosh , Reyan Ahmed , Kwang-Sung Jun , Stephen Kobourov , Michael T. Goodrich

Deep neural networks employ specialized architectures for vision, sequential and language tasks, yet this proliferation obscures their underlying commonalities. We introduce a unified matrix-order framework that casts convolutional,…

Machine Learning · Computer Science 2025-07-24 Yuzhou Zhu

We present TeraPart, a memory-efficient multilevel graph partitioning method that is designed to scale to extremely large graphs. In balanced graph partitioning, the goal is to divide the vertices into $k$ blocks with balanced size while…

Data Structures and Algorithms · Computer Science 2024-10-28 Daniel Salwasser , Daniel Seemaier , Lars Gottesbüren , Peter Sanders

The aim of this work is to develop a fully-distributed algorithmic framework for training graph convolutional networks (GCNs). The proposed method is able to exploit the meaningful relational structure of the input data, which are collected…

Machine Learning · Computer Science 2022-12-21 Simone Scardapane , Indro Spinelli , Paolo Di Lorenzo

We study a graph partitioning problem motivated by the simulation of the physical movement of multi-body systems on an atomistic level, where the forces are calculated from a quantum mechanical description of the electrons. Several advanced…

The graph partitioning problem is widely used and studied in many practical and theoretical applications. The multilevel strategies represent today one of the most effective and efficient generic frameworks for solving this problem on…

Data Structures and Algorithms · Computer Science 2012-04-04 Ilya Safro , Peter Sanders , Christian Schulz

This paper presents a convex-analytic framework to learn sparse graphs from data. While our problem formulation is inspired by an extension of the graphical lasso using the so-called combinatorial graph Laplacian framework, a key difference…

Signal Processing · Electrical Eng. & Systems 2021-09-20 Tatsuya Koyakumaru , Masahiro Yukawa , Eduardo Pavez , Antonio Ortega

Bipartite graphs model the relationships between two disjoint sets of entities in several applications and are naturally drawn as 2-layer graph drawings. In such drawings, the two sets of entities (vertices) are placed on two parallel lines…

Even distribution of irregular workload to processing units is crucial for efficient parallelization in many applications. In this work, we are concerned with a spatial partitioning called rectilinear partitioning (also known as generalized…

Data Structures and Algorithms · Computer Science 2020-09-17 Abdurrahman Yaşar , Muhammed Fatih Balin , Xiaojing An , Kaan Sancak , Ümit V. Çatalyürek

We present a fast sparse matrix permutation algorithm tailored to linear systems arising from triangle meshes. Our approach produces nested-dissection-style permutations while significantly reducing permutation runtime overhead. Rather than…

Segmentation of image sequences is an important task in medical image analysis, which enables clinicians to assess the anatomy and function of moving organs. However, direct application of a segmentation algorithm to each time frame of a…

Computer Vision and Pattern Recognition · Computer Science 2018-08-02 Wenjia Bai , Hideaki Suzuki , Chen Qin , Giacomo Tarroni , Ozan Oktay , Paul M. Matthews , Daniel Rueckert

In order to manage massive graphs in practice, it is often necessary to resort to graph compression, which aims at reducing the memory used when storing and processing the graph. Efficient compression methods have been proposed in the…

Social and Information Networks · Computer Science 2023-01-12 Maximilien Danisch , Ioannis Panagiotas , Lionel Tabourier

A node separator of a graph is a subset S of the nodes such that removing S and its incident edges divides the graph into two disconnected components of about equal size. In this work, we introduce novel algorithms to find small node…

Data Structures and Algorithms · Computer Science 2015-09-04 Peter Sanders , Christian Schulz

Graph Neural Networks (GNNs) have demonstrated a great potential in a variety of graph-based applications, such as recommender systems, drug discovery, and object recognition. Nevertheless, resource-efficient GNN learning is a rarely…

Machine Learning · Computer Science 2022-02-18 Zihui Xue , Yuedong Yang , Mengtian Yang , Radu Marculescu

Sparse matrix ordering is a vital optimization technique often employed for solving large-scale sparse matrices. Its goal is to minimize the matrix bandwidth by reorganizing its rows and columns, thus enhancing efficiency. Conventional…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-11-14 Tao Tang , Youfu Jiang , Yingbo Cui , Jianbin Fang , Peng Zhang , Lin Peng , Chun Huang

This paper presents the results of an experimental study of graph partitioning. We describe a new heuristic technique, path optimization, and its application to two variations of graph partitioning: the max_cut problem and the…

Combinatorics · Mathematics 2016-09-06 Jonathan Berry , Mark Goldberg

Many applications produce massive complex networks whose analysis would benefit from parallel processing. Parallel algorithms, in turn, often require a suitable network partition. For solving optimization tasks such as graph partitioning on…

Data Structures and Algorithms · Computer Science 2014-02-14 Roland Glantz , Henning Meyerhenke , Christian Schulz