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The dynamic properties and independence structure of stochastic kinetic models (SKMs) are analyzed. An SKM is a highly multivariate jump process used to model chemical reaction networks, particularly those in biochemical and cellular…

Statistics Theory · Mathematics 2010-10-20 Clive G. Bowsher

Graphical models are widely used in scienti fic and engineering research to represent conditional independence structures between random variables. In many controlled experiments, environmental changes or external stimuli can often alter…

Machine Learning · Computer Science 2012-03-19 Bai Zhang , Yue Wang

Graphical model learning and inference are often performed using Bayesian techniques. In particular, learning is usually performed in two separate steps. First, the graph structure is learned from the data; then the parameters of the model…

Statistics Theory · Mathematics 2013-09-09 Marco Scutari

In a traditional Gaussian graphical model, data homogeneity is routinely assumed with no extra variables affecting the conditional independence. In modern genomic datasets, there is an abundance of auxiliary information, which often gets…

Methodology · Statistics 2023-08-16 Yabo Niu , Yang Ni , Debdeep Pati , Bani K. Mallick

This paper introduces a novel class of models for binary data, which we call log-mean linear models. The characterizing feature of these models is that they are specified by linear constraints on the log-mean linear parameter, defined as a…

Methodology · Statistics 2013-01-14 Alberto Roverato , Monia Lupparelli , Luca La Rocca

In undirected graphical models, learning the graph structure and learning the functions that relate the predictive variables (features) to the responses given the structure are two topics that have been widely investigated in machine…

Artificial Intelligence · Computer Science 2015-03-19 Shilin Ding

Linear causal models are important tools for modeling causal dependencies and yet in practice, only a subset of the variables can be observed. In this paper, we examine the parameter identifiability of these models by investigating whether…

Machine Learning · Computer Science 2025-02-11 Xinshuai Dong , Ignavier Ng , Biwei Huang , Yuewen Sun , Songyao Jin , Roberto Legaspi , Peter Spirtes , Kun Zhang

Functional graphical models have undergone extensive development during the recent years, leading to a variety models such as the functional Gaussian graphical model, the functional copula Gaussian graphical model, the functional Bayesian…

Methodology · Statistics 2026-01-23 Kyongwon Kim , Bing Li

The regular models of a normal logic program are a particular type of partial (i.e. 3-valued) models which correspond to stable partial models with minimal undefinedness. In this paper, we explore graphical conditions on the dependency…

Logic in Computer Science · Computer Science 2025-02-14 Van-Giang Trinh , Belaid Benhamou , Sylvain Soliman , François Fages

The fundamental concepts underlying in Markov networks are the conditional independence and the set of rules called Markov properties that translates conditional independence constraints into graphs. In this article we introduce the concept…

Methodology · Statistics 2016-03-14 Niharika Gauraha

For a directed acyclic graph, there are two known criteria to decide whether any specific conditional independence statement is implied for all distributions factorized according to the given graph. Both criteria are based on special types…

Statistics Theory · Mathematics 2009-04-03 Giovanni M. Marchetti , Nanny Wermuth

For a multivariate normal distribution, the sparsity of the covariance and precision matrices encodes complete information about independence and conditional independence properties. For general distributions, the covariance and precision…

Statistics Theory · Mathematics 2021-09-22 Rebecca E Morrison , Ricardo Baptista , Estelle L Basor

Symbolic Data Analysis works with variables for which each unit or class of units takes a finite set of values/categories, an interval or a distribution (an histogram, for instance). When to each observation corresponds an empirical…

Methodology · Statistics 2013-05-01 Sónia Dias , Paula Brito

Undirected probabilistic graphical models represent the conditional dependencies, or Markov properties, of a collection of random variables. Knowing the sparsity of such a graphical model is valuable for modeling multivariate distributions…

Machine Learning · Statistics 2023-02-28 Ricardo Baptista , Youssef Marzouk , Rebecca E. Morrison , Olivier Zahm

Conditional independence models in the Gaussian case are algebraic varieties in the cone of positive definite covariance matrices. We study these varieties in the case of Bayesian networks, with a view towards generalizing the recursive…

Algebraic Geometry · Mathematics 2007-05-23 Seth Sullivant

High-dimensional multivariate time series are common in many scientific and industrial applications, where the interest lies in identifying key dependence structure within the data for subsequent analysis tasks, such as forecasting. An…

Methodology · Statistics 2025-12-15 Madeline A. Shelley , Chiara Boetti , Marina I. Knight , Matthew A. Nunes

We consider the problem of learning the structure of a pairwise graphical model over continuous and discrete variables. We present a new pairwise model for graphical models with both continuous and discrete variables that is amenable to…

Machine Learning · Statistics 2013-07-05 Jason D. Lee , Trevor J. Hastie

We study the problem of independence and conditional independence tests between categorical covariates and a continuous response variable, which has an immediate application in genetics. Instead of estimating the conditional distribution of…

Methodology · Statistics 2015-05-05 Bo Jiang , Chao Ye , Jun S. Liu

When scholars study joint distributions of multiple variables, copulas are useful. However, if the variables are not linearly correlated with each other yet are still not independent, most of conventional copulas are not up to the task.…

Methodology · Statistics 2023-08-08 Kentaro Fukumoto

This paper considers a challenging problem of identifying a causal graphical model under the presence of latent variables. While various identifiability conditions have been proposed in the literature, they often require multiple pure…

Machine Learning · Statistics 2026-02-03 Seunghyun Lee , Yuqi Gu