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As COVID-19 spread through the United States in 2020, states began to set up alert systems to inform policy decisions and serve as risk communication tools for the general public. Many of these systems, like in Ohio, included indicators…

Applications · Statistics 2023-05-12 David Kline , Ayaz Hyder , Enhao Liu , Michael Rayo , Samuel Malloy , Elisabeth Root

To increase situational awareness and support evidence-based policy-making, we formulated two types of mathematical models for COVID-19 transmission within a regional population. One is a fitting function that can be calibrated to reproduce…

The new corona virus disease -- COVID-2019 -- is rapidly spreading through the world. The availability of unbiased timely statistics of trends in disease events are a key to effective responses. But due to reporting delays, the most…

Populations and Evolution · Quantitative Biology 2020-06-15 Adam Altmejd , Joacim Rocklöv , Jonas Wallin

As the interactions between people increases, the impending menace of COVID-19 outbreaks materialize, and there is an inclination to apply lockdowns. In this context, it is essential to have easy-to-use indicators for people to use as a…

Populations and Evolution · Quantitative Biology 2021-01-26 Joaquín Salas

We analyse the temporal and regional structure in mortality rates related to COVID-19 infections. We relate the fatality date of each deceased patient to the corresponding day of registration of the infection, leading to a nowcasting model…

Applications · Statistics 2020-11-30 Marc Schneble , Giacomo De Nicola , Göran Kauermann , Ursula Berger

Governments around the world continue to act to contain and mitigate the spread of COVID-19. The rapidly evolving situation compels officials and executives to continuously adapt policies and social distancing measures depending on the…

Applications · Statistics 2021-02-19 Giacomo De Nicola , Marc Schneble , Göran Kauermann , Ursula Berger

The time varying reproduction number R is a critical variable for situational awareness during infectious disease outbreaks, but delays between infection and reporting hinder its accurate estimation in real time. We propose a nowcasting…

We introduce a Bayesian sequential data assimilation method for COVID-19 forecasting. It is assumed that suitable transmission, epidemic and observation models are available and previously validated and the transmission and epidemic models…

The COVID-19 pandemic represents the most significant public health disaster since the 1918 influenza pandemic. During pandemics such as COVID-19, timely and reliable spatio-temporal forecasting of epidemic dynamics is crucial. Deep…

Machine Learning · Computer Science 2020-11-25 Lijing Wang , Aniruddha Adiga , Srinivasan Venkatramanan , Jiangzhuo Chen , Bryan Lewis , Madhav Marathe

The COVID-19 pandemic has highlighted delayed reporting as a significant impediment to effective disease surveillance and decision-making. In the absence of timely data, statistical models which account for delays can be adopted to nowcast…

Applications · Statistics 2020-11-19 Oliver Stoner , Theo Economou , Alba Halliday

Objective: To develop machine learning models that can predict the number of COVID-19 cases per day given the last 14 days of environmental and mobility data. Approach: COVID-19 data from four counties around Toronto, Ontario, were used.…

Machine Learning · Computer Science 2023-03-21 Daniel L. Silver , Rinda Digamarthi

Updating observations of a signal due to the delays in the measurement process is a common problem in signal processing, with prominent examples in a wide range of fields. An important example of this problem is the nowcasting of COVID-19…

We propose, implement, and evaluate a method to estimate the daily number of new symptomatic COVID-19 infections, at the level of individual U.S. counties, by deconvolving daily reported COVID-19 case counts using an estimated…

Applications · Statistics 2022-03-01 Maria Jahja , Andrew Chin , Ryan J. Tibshirani

The coronavirus disease 2019 (COVID-19) has become a public health emergency of international concern affecting more than 200 countries and territories worldwide. As of September 30, 2020, it has caused a pandemic outbreak with more than 33…

Populations and Evolution · Quantitative Biology 2020-10-13 Tanujit Chakraborty , Indrajit Ghosh , Tirna Mahajan , Tejasvi Arora

The real-time analysis of infectious disease surveillance data, e.g., in the form of a time-series of reported cases or fatalities, is essential in obtaining situational awareness about the current dynamics of an adverse health event such…

Methodology · Statistics 2023-01-11 Fanny Bergström , Felix Günther , Michael Höhle , Tom Britton

The outbreak of Coronavirus Disease 2019 (COVID-19) is an ongoing pandemic affecting over 200 countries and regions. Inference about the transmission dynamics of COVID-19 can provide important insights into the speed of disease spread and…

Methodology · Statistics 2020-07-06 Tianjian Zhou , Yuan Ji

Accurate forecasts of COVID-19 is central to resource management and building strategies to deal with the epidemic. We propose a heterogeneous infection rate model with human mobility for epidemic modeling, a preliminary version of which we…

Populations and Evolution · Quantitative Biology 2020-05-06 Ajitesh Srivastava , Viktor K. Prasanna

Short-term forecasts of infectious disease spread are a critical component in risk evaluation and public health decision making. While different models for short-term forecasting have been developed, open questions about their relative…

In this paper, we propose a deep learning model to forecast the range of increase in COVID-19 infected cases in future days and we present a novel method to compute equidimensional representations of multivariate time series and…

Computers and Society · Computer Science 2020-08-04 Ankit Ramchandani , Chao Fan , Ali Mostafavi

Obtaining up to date information on the number of UK COVID-19 regional infections is hampered by the reporting lag in positive test results for people with COVID-19 symptoms. In the UK, for "Pillar 2" swab tests for those showing symptoms,…

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