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Reaction-diffusion systems have been proposed as a model for pattern formation and morphogenesis. The Fickian diffusion typically employed in these constructions model the Brownian motion of particles. The biological and chemical elements…

Quantitative Methods · Quantitative Biology 2023-11-09 Siddhartha Srivastava , Krishna Garikipati

We used nonequilibrium molecular dynamics simulations to study the shear deformation of metallic composites composed of alternating layers of Cu and Au. Our simulations reveal the formation of "vortices" or "swirls" if the bimaterial…

Materials Science · Physics 2020-01-15 Adrien Gola , Ruth Schwaiger , Peter Gumbsch , Lars Pastewka

We study instabilities and pattern formation in reaction-diffusion layers that are diffusively coupled. For two-layer systems of identical two-component reactions, we analyze the stability of homogeneous steady states by exploiting the…

Pattern Formation and Solitons · Physics 2015-06-03 Anne J. Catlla , Amelia McNamara , Chad M. Topaz

We study the effect of randomness and anisotropy on Turing patterns in reaction-diffusion systems. For this purpose, the Gierer-Meinhardt model of pattern formation is considered. The cases we study are: (i)randomness in the underlying…

Statistical Mechanics · Physics 2009-10-30 Indrani Bose , Indranath Chaudhuri

Self-organization, the ability of a system of microscopically interacting entities to shape macroscopically ordered structures, is ubiquitous in Nature. Spatio-temporal patterns are abundantly observed in a large plethora of applications,…

Pattern Formation and Solitons · Physics 2019-06-17 Malbor Asllani , Timoteo Carletti , Duccio Fanelli , Philip K. Maini

This paper proposes a control theoretic framework to model and analyze the self-organized pattern formation of molecular concentrations in biomolecular communication networks, emerging applications in synthetic biology. In biomolecular…

Molecular Networks · Quantitative Biology 2019-01-08 Yutaka Hori , Hiroki Miyazako , Soichiro Kumagai , Shinji Hara

This article is concerned with the stability and long-time dynamics of structures arising from a structureless state. The paradigm is suggested by developmental biology, where morphogenesis is thought to result from a competition between…

Pattern Formation and Solitons · Physics 2007-06-18 Hans G. Kaper , Shouhong Wang , Masoud Yari

The Turing mechanism describes the emergence of spatial patterns due to spontaneous symmetry breaking in reaction-diffusion processes and underlies many developmental processes. Identifying Turing mechanisms in biological systems defines a…

Machine Learning · Computer Science 2021-08-20 David Schnörr , Christoph Schnörr

Originating from the pioneering study of Alan Turing, the bifurcation analysis predicting spatial pattern formation from a spatially uniform state for diffusing morphogens or chemical species that interact through nonlinear reactions is a…

Pattern Formation and Solitons · Physics 2023-01-18 Merlin Pelz , Michael J. Ward

Collective organisation of patterns into ring-like configurations has been well-studied when patterns are subject to either weak or semi-strong interactions. However, little is known numerically or analytically about their formation when…

Dynamical Systems · Mathematics 2024-03-06 Dan J. Hill , Jason J. Bramburger , David J. B. Lloyd

The article considers the simulation of the formation of a multilayer nanocomposite, the combination of elements of which gives rise to the effect of a spin valve. The relevance and importance of the effects in the field of spintronics and…

Superconductivity · Physics 2022-08-18 A. V. Vakhrushev , A. Yu. Fedotov , Yu. B. Savva , A. S. Sidorenko

Pattern dynamics on curved surfaces are found everywhere in nature. The geometry of surfaces have been shown to influence dynamics and play a functional role, yet a comprehensive understanding is still elusive. Here, we report for the first…

Pattern Formation and Solitons · Physics 2022-06-15 Ryosuke Nishide , Shuji Ishihara

A large variety of real systems are composed by entities in relationships which can be represented by networks. In many of these systems, elements are embedded in the space and location information impacts properties and evolution. Local…

Physics and Society · Physics 2021-11-09 Michele Tirico , Stefan Balev , Antoine Dutot , Damien Olivier

Morphogenesis is the ensemble of processes that determines form, shape and patterns in organisms. Based on a reaction-diffusion theoretical setting and some prototype reaction schemes, we make a review of the models and experiments that…

Cell Behavior · Quantitative Biology 2007-05-23 Rui Dilao

We estimate density of defects frozen into a biological Turing pattern which was turned on at a finite rate. A self-locking of gene expression in individual cells, which makes the Turing transition discontinuous, stabilizes the pattern…

Biological Physics · Physics 2007-05-23 Jacek Dziarmaga

This paper aims to investigate a reaction-diffusion model which describes in-host infection for Mycobacterium tuberculosis (Mtb) allowing random motion (i.e. linear diffusion) and chemotaxis (i.e. non-linear diffusion) of macrophages and…

Populations and Evolution · Quantitative Biology 2024-10-16 C. Accarino , R. Accarino , F. Capone , R. De Luca , L. Fiorentino , G. Massa

The problem of pattern formation in a generic two species reaction--diffusion model is studied, under the hypothesis that only one species can diffuse. For such a system, the classical Turing instability cannot take place. At variance, by…

Statistical Mechanics · Physics 2013-09-16 Laura Cantini , Claudia Cianci , Duccio Fanelli , Emma Massi , Luigi Barletti

Various metallic structures of complex shape, resembling natural objects such as plants, mushrooms, and seashells, were produced when growing nanowires by means of pulsed current electroplating in porous membranes. These structures occur as…

Materials Science · Physics 2013-08-05 Gennady Strukov , Galina Strukova

The formation of protein patterns inside cells is generically described by reaction-diffusion models. The study of such systems goes back to Turing, who showed how patterns can emerge from a homogenous steady state when two reactive…

Biological Physics · Physics 2020-02-26 Manon C. Wigbers , Fridtjof Brauns , Tobias Hermann , Erwin Frey

In a recent paper [1] we developed a theoretical model to describe current transients arising during electrochemical deposition experiments performed at the bottom of sub-micrometric cylindrical vessels with permeable walls. In the present…

Chemical Physics · Physics 2011-12-09 P. C. T. DÁjello , M. L. Sartorelli , L. Lauck