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A common challenge in the natural sciences is to disentangle distinct, unknown sources from observations. Examples of this source separation task include deblending galaxies in a crowded field, distinguishing the activity of individual…

Machine Learning · Computer Science 2025-10-08 Sebastian Wagner-Carena , Aizhan Akhmetzhanova , Sydney Erickson

Deep learning is used in computer vision problems with important applications in several scientific fields. In ecology for example, there is a growing interest in deep learning for automatizing repetitive analyses on large amounts of…

The study of interactions between multiple species in an ecosystem is an active and impactful direction of inquiry. This is true in particular for fragile systems in which even small perturbations of their functional parameters can produce…

Populations and Evolution · Quantitative Biology 2025-01-14 Anca Radulescu , Richard Halpern , Drew Kozlowski , Conor O'Riordan

The use of multiple Decision Models (DMs) enables to enhance the accuracy in decisions and at the same time allows users to evaluate the confidence in decision making. In this paper we explore the ability of multiple DMs to learn from a…

Artificial Intelligence · Computer Science 2008-05-27 Vitaly Schetinin , Dayou Li , Carsten Maple

We apply recently developed inference methods based on general coalescent processes to DNA sequence data obtained from various marine species. Several of these species are believed to exhibit so-called shallow gene genealogies, potentially…

Populations and Evolution · Quantitative Biology 2012-11-06 Matthias Steinrücken , Matthias Birkner , Jochen Blath

Site occupancy models are routinely used to estimate the probability of species presence from either abundance or presence-absence data collected across sites with repeated sampling occasions. In the last two decades, a broad class of…

Methodology · Statistics 2022-04-05 Wen-Han Hwang , Jakub Stoklosa , Lu-Fang Chen

Distance sampling is a widely used method for estimating wildlife population abundance. The fact that conventional distance sampling methods are partly design-based constrains the spatial resolution at which animal density can be estimated…

Methodology · Statistics 2017-06-23 Y. Yuan , F. E. Bachl , F. Lindgren , D. L. Brochers , J. B. Illian , S. T. Buckland , H. Rue , T. Gerrodette

The occurrence and distributions of wildlife populations and communities are shifting as a result of global changes. To evaluate whether these shifts are negatively impacting biodiversity processes, it is critical to monitor the status,…

Populations and Evolution · Quantitative Biology 2021-09-07 Jeffrey W. Doser , Wendy Leuenberger , T. Scott Sillett , Michael T. Hallworth , Elise F. Zipkin

In this paper, we aim at developing new methods to join machine learning techniques and macroscopic differential models for vehicular traffic estimation and forecast. It is well known that data-driven and model-driven approaches have…

Machine Learning · Computer Science 2024-12-06 Maya Briani , Emiliano Cristiani , Elia Onofri

We analyze the spatial distributions of two groups of benthic foraminifera (Adelosina spp. + Quinqueloculina spp. and Elphidium spp.), along Sicilian coast, and their correlation with six different heavy metals, responsible for the…

Populations and Evolution · Quantitative Biology 2008-10-07 D. Valenti , L. Tranchina , M. Brai , A. Caruso , C. Cosentino , B. Spagnolo

In recent biomedical scientific problems, it is a fundamental issue to integratively cluster a set of objects from multiple sources of datasets. Such problems are mostly encountered in genomics, where data is collected from various sources,…

In environmental studies, realistic simulations are essential for understanding complex systems. Statistical emulation with Gaussian processes (GPs) in functional data models have become a standard tool for this purpose. Traditional…

Applications · Statistics 2024-09-26 R. Jacob Andros , Rajarshi Guhaniyogi , Devin Francom , Donatella Pasqualini

This paper presents a study of the two-predators-two-preys discrete-time Lotka-Volterra model with self- inhibition terms for preys with direct applications to ecological problems. Parameters in the model are modified so that each of them…

Dynamical Systems · Mathematics 2012-11-27 Hanbaek Lyu , Piotr Grzegorz Jablonski

This article proposes a graphical model that handles mixed-type, multi-group data. The motivation for such a model originates from real-world observational data, which often contain groups of samples obtained under heterogeneous conditions…

Methodology · Statistics 2023-01-02 Sjoerd Hermes , Joost van Heerwaarden , Pariya Behrouzi

Species distribution models (SDMs) are important statistical tools for ecologists to understand and predict species range. However, standard SDMs do not explicitly incorporate dynamic processes like dispersal. This limitation may lead to…

Populations and Evolution · Quantitative Biology 2021-08-27 Julie Louvrier , Julien Papaïx , Christophe Duchamp , Olivier Gimenez

Many attempts to relate animal foraging patterns to landscape heterogeneity are focused on the analysis of foragers movements. Resource detection patterns in space and time are not commonly studied, yet they are tightly coupled to landscape…

Populations and Evolution · Quantitative Biology 2012-04-24 Octavio Miramontes , Denis Boyer , Frederic Bartumeus

Today's data-heavy research environment requires the integration of different sources of information into structured data sets that can not be analyzed as simple matrices. We introduce an old technique, known in the European data analyses…

Applications · Statistics 2012-02-27 Omar De la Cruz , Susan Holmes

This paper reviews the most important information fusion data-driven algorithms based on Machine Learning (ML) techniques for problems in Earth observation. Nowadays we observe and model the Earth with a wealth of observations, from a…

Computer Vision and Pattern Recognition · Computer Science 2020-12-11 S. Salcedo-Sanz , P. Ghamisi , M. Piles , M. Werner , L. Cuadra , A. Moreno-Martínez , E. Izquierdo-Verdiguier , J. Muñoz-Marí , Amirhosein Mosavi , G. Camps-Valls

We present new theoretical and empirical results on the probability distributions of species persistence times in natural ecosystems. Persistence times, defined as the timespans occurring between species' colonization and local extinction…

Populations and Evolution · Quantitative Biology 2012-03-21 S. Suweis , E. Bertuzzo , L. Mari , I. Rodriguez-Iturbe , A. Maritan , A. Rinaldo

Advances in cellular imaging technologies, especially those based on fluorescence in situ hybridization (FISH) now allow detailed visualization of the spatial organization of human or bacterial cells. Quantifying this spatial organization…

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