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Related papers: Decorated Merge Trees for Persistent Topology

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Recently, $p$-presentation distances for $p\in [1,\infty]$ were introduced for merge trees and multiparameter persistence modules as more sensitive variations of the respective interleaving distances ($p=\infty)$. It is well-known that…

Computational Geometry · Computer Science 2025-06-09 Håvard Bakke Bjerkevik , Magnus Bakke Botnan

We redevelop persistent homology (topological persistence) from a categorical point of view. The main objects of study are diagrams, indexed by the poset of real numbers, in some target category. The set of such diagrams has an interleaving…

Algebraic Topology · Mathematics 2014-05-13 Peter Bubenik , Jonathan A. Scott

Persistent homology is a tool that can be employed to summarize the shape of data by quantifying homological features. When the data is an object in $\mathbb{R}^d$, the (augmented) persistent homology transform ((A)PHT) is a family of…

Computational Geometry · Computer Science 2022-12-27 Brittany Terese Fasy , Samuel Micka , David L. Millman , Anna Schenfisch , Lucia Williams

In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…

Discrete Mathematics · Computer Science 2011-04-19 Emeric Gioan , Christophe Paul

Optimal Transport is a theory that allows to define geometrical notions of distance between probability distributions and to find correspondences, relationships, between sets of points. Many machine learning applications are derived from…

Machine Learning · Statistics 2020-11-10 Titouan Vayer

High order networks are weighted hypergraphs col- lecting relationships between elements of tuples, not necessarily pairs. Valid metric distances between high order networks have been defined but they are difficult to compute when the…

Social and Information Networks · Computer Science 2016-05-04 Weiyu Huang , Alejandro Ribeiro

We address the basic question in discrete Morse theory of combining discrete gradient fields that are partially defined on subsets of the given complex. This is a well-posed question when the discrete gradient field $V$ is generated using a…

Geometric Topology · Mathematics 2022-01-28 Douglas Lenseth , Boris Goldfarb

Ordered sets and maps play important roles as index structures in relational data models. When a shared index in a multi-user system is modified concurrently, the current state of the index will diverge into multiple versions containing the…

Data Structures and Algorithms · Computer Science 2013-01-16 Olle Liljenzin

Despite the obvious similarities between the metrics used in topological data analysis and those of optimal transport, an optimal-transport based formalism to study persistence diagrams and similar topological descriptors has yet to come.…

Computational Geometry · Computer Science 2024-05-29 Vincent Divol , Théo Lacombe

Symmetry-preserving (mimetic) discretization aims to preserve certain properties of a continuous differential operator in its discrete counterpart. For these discretizations, stability and (discrete) conservation of mass, momentum and…

Numerical Analysis · Mathematics 2019-09-25 B. van 't Hof , M. J. Vuik

We design and study a Contextual Memory Tree (CMT), a learning memory controller that inserts new memories into an experience store of unbounded size. It is designed to efficiently query for memories from that store, supporting logarithmic…

Machine Learning · Computer Science 2019-06-04 Wen Sun , Alina Beygelzimer , Hal Daumé , John Langford , Paul Mineiro

Recent years have witnessed a tremendous growth using topological summaries, especially the persistence diagrams (encoding the so-called persistent homology) for analyzing complex shapes. Intuitively, persistent homology maps a potentially…

Computational Geometry · Computer Science 2021-04-19 Samantha Chen , Yusu Wang

This work introduces a novel interpretable machine learning method called Mixture of Decision Trees (MoDT). It constitutes a special case of the Mixture of Experts ensemble architecture, which utilizes a linear model as gating function and…

Machine Learning · Computer Science 2022-11-29 Simeon Brüggenjürgen , Nina Schaaf , Pascal Kerschke , Marco F. Huber

The use of distributions and high-level features from deep architecture has become commonplace in modern computer vision. Both of these methodologies have separately achieved a great deal of success in many computer vision tasks. However,…

Machine Learning · Statistics 2021-01-15 Junier B. Oliva , Danica J. Sutherland , Barnabás Póczos , Jeff Schneider

Symmetric positive definite (SPD) matrices (e.g., covariances, graph Laplacians, etc.) are widely used to model the relationship of spatial or temporal domain. Nevertheless, SPD matrices are theoretically embedded on Riemannian manifolds.…

Computer Vision and Pattern Recognition · Computer Science 2017-10-03 Tong Zhang , Wenming Zheng , Zhen Cui , Chaolong Li

The interleaving distance is a key tool for comparing merge trees, which provide topological summaries of scalar functions. In this work, we define an average merge tree for a pair of merge trees using the interleaving distance. Since such…

Computational Geometry · Computer Science 2026-03-03 Elena Farahbakhsh Touli , Ingrid Hotz , Talha Bin Masood

Persistence diagrams (PD)s play a central role in topological data analysis, and are used in an ever increasing variety of applications. The comparison of PD data requires computing comparison metrics among large sets of PDs, with metrics…

Computational Geometry · Computer Science 2024-02-23 Rolando Kindelan Nuñez , Mircea Petrache , Mauricio Cerda , Nancy Hitschfeld

In this paper we introduce a variation on the multidimensional segment tree, formed by unifying different interpretations of the dimensionalities of the data structure. We give some new definitions to previously well-defined concepts that…

Computational Geometry · Computer Science 2013-02-28 David P. Wagner

We combine standard persistent homology with image persistent homology to define a novel way of characterizing shapes and interactions between them. In particular, we introduce: (1) a mixup barcode, which captures geometric-topological…

Algebraic Topology · Mathematics 2026-05-19 Hubert Wagner , Nickolas Arustamyan , Matthew Wheeler , Peter Bubenik

Recent years have witnessed a surge of biological interest in the minimum spanning tree (MST) problem for its relevance to automatic model construction using the distances between data points. Despite the increasing use of MST algorithms…

Quantitative Methods · Quantitative Biology 2015-11-02 Momoko Hayamizu , Hiroshi Endo , Kenji Fukumizu
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