Related papers: Spontaneous knotting of a flexible fiber in chaoti…
We study local conformational biases in the dynamics of {\alpha}-synuclein by using all-atom simulations with explicit and implicit solvents. The biases are related to the frequency of the specific contact formation. In both approaches, the…
The existence of stable links and knots is demonstrated in three-dimensional, bistable, chemical media. The reaction-diffusion medium segregates into regions of high and low concentration separated by sharp interfaces. The interfaces repel…
We study the deflection and fluctuations of a clamped elastic fiber embedded in 2D foam under quasistatic flow. At all times, the fiber conformation results from the elasto-capillary interactions with the foam. We independently measure the…
We give a short alternative proof of Honda-Kazec-Matic's result, which states that a fibered knot with pseudo-Anosov monodromy and fractional Dehn twist coefficient $\geq1$ supports a contact structure that is a perturbation of a taut…
We investigate the 3D stationary flow of a weakly conducting fluid in a cubic cavity, driven by the Lorentz force created by two permanent magnets and a weak constant current. Our goal is to determine the conditions leading to efficient…
Curved elastic shells can be fabricated through molding or by harnessing residual stresses. These shells often exhibit snap-through behavior and multistability when loaded. We present a unique way of fabricating curved elastic shells that…
Based on an estimate of the knot entropy of a worm-like chain we predict that the interplay of bending energy and confinement entropy will result in a compact metastable configuration of the knot that will diffuse, without spreading, along…
A string of tracers, interacting elastically, in a turbulent flow is shown to have a dramatically different behaviour when compared to the non-interacting case. In particular, such an elastic chain shows strong preferential sampling of the…
We propose an experiment to demonstrate spontaneous ordering and symmetry breaking of kinesin-driven microtubules confined to an optical trap. Calculations involving the feasibility of such an experiment are first performed which analyze…
Biological information processing is often carried out by complex networks of interconnected dynamical units. A basic question about such networks is that of reliability: if the same signal is presented many times with the network in…
The altenating knots, links and twists projected on the S_2 sphere are identified with the phase Space of a Hamiltonian dynamic system of one degree of freedom. The saddles of the system correspond to the crossing points, the edges, to the…
By tracking the divergence of two initially close trajectories in phase space in an Eulerian approach to forced turbulence, the relation between the maximal Lyapunov exponent $\lambda$, and the Reynolds number $Re$ is measured using direct…
Besides mathematical interest, knots and knot theory have important applications in physics, chemistry, and biology. Stasiak and colleagues devised a constructive method for a knot "energy" using a Metropolis Monte Carlo algorithm to…
The dynamics of filaments in flow are central to understanding a wide range of biological and soft-matter systems, yet their behavior under time-dependent forcing remains poorly understood. Here, we investigate the long-time dynamics of…
When transported in confined geometries rigid fibers show interesting transport dynamics induced by friction with the top and bottom walls. Fiber flexibility causes an additional coupling between fiber deformation and transport and is…
We consider the problem of deciding whether a polygonal knot in 3-dimensional Euclidean space is unknotted, capable of being continuously deformed without self-intersection so that it lies in a plane. We show that this problem, {\sc…
We introduce natural language processing into the study of knot theory, as made natural by the braid word representation of knots. We study the UNKNOT problem of determining whether or not a given knot is the unknot. After describing an…
The dynamical properties of a particle in a gravitational field colliding with a rigid wall moving with piecewise constant velocity are studied. The linear nature of the wall's motion permits further analytical investigation than is…
We investigate the spatio-temporal structure of the most likely configurations realising extremely high vorticity or strain in the stochastically forced 3D incompressible Navier-Stokes equations. Most likely configurations are computed by…
Phoretic mechanisms, whereby gradients of chemical solutes induce surface-driven flows, have recently been used to generate directed propulsion of patterned colloidal particles. When the chemical solutes diffuse slowly, an instability…