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Omics technologies enable unbiased investigation of biological systems through massively parallel sequence acquisition or molecular measurements, bringing the life sciences into the era of Big Data. A central challenge posed by such omics…

Molecular Networks · Quantitative Biology 2014-11-04 Xiaoxi Dong , Anatoly Yambartsev , Stephen Ramsey , Lina Thomas , Natalia Shulzhenko , Andrey Morgun

Understanding the structural complexity and predictability of complex networks is a central challenge in network science. Although recent studies have revealed a relationship between compression-based entropy and link prediction…

Social and Information Networks · Computer Science 2025-10-14 Sebastián Brzovic , Cristóbal Rojas , Andrés Abeliuk

Understanding how humans process visual information is one of the crucial steps for unraveling the underlying mechanism of brain activity. Recently, this curiosity has motivated the fMRI-to-image reconstruction task; given the fMRI data…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Jaehoon Joo , Taejin Jeong , Seongjae Hwang

Cross-modal retrieval is gaining increasing efficacy and interest from the research community, thanks to large-scale training, novel architectural and learning designs, and its application in LLMs and multimodal LLMs. In this paper, we move…

Computer Vision and Pattern Recognition · Computer Science 2025-03-05 Davide Caffagni , Sara Sarto , Marcella Cornia , Lorenzo Baraldi , Rita Cucchiara

Exploring data relations across multiple views has been a common task in many domains such as bioinformatics, cybersecurity, and healthcare. To support this, various techniques (e.g., visual links and brushing and linking) are used to show…

Human-Computer Interaction · Computer Science 2025-05-30 Abdul Rahman Shaikh , Maoyuan Sun , Xingchen Liu , Hamed Alhoori , Jian Zhao , David Koop

Scientific discovery is a cumulative process and requires new ideas to be situated within an ever-expanding landscape of existing knowledge. An emerging and critical challenge is how to identify conceptually relevant prior work from rapidly…

Information Retrieval · Computer Science 2026-01-15 Yuexi Shen , Minqian Liu , Dawei Zhou , Lifu Huang

Large repositories of products, patents and scientific papers offer an opportunity for building systems that scour millions of ideas and help users discover inspirations. However, idea descriptions are typically in the form of unstructured…

Human-Computer Interaction · Computer Science 2022-02-18 Tom Hope , Ronen Tamari , Hyeonsu Kang , Daniel Hershcovich , Joel Chan , Aniket Kittur , Dafna Shahaf

The cognitive sciences aim to understand intelligence by formalizing underlying operations as computational models. Traditionally, this follows a cycle of discovery where researchers develop paradigms, collect data, and test predefined…

Artificial Intelligence · Computer Science 2026-03-24 Akshay K. Jagadish , Milena Rmus , Kristin Witte , Marvin Mathony , Marcel Binz , Eric Schulz

We describe SynGraphy, a method for visually summarising the structure of large network datasets that works by drawing smaller graphs generated to have similar structural properties to the input graphs. Visualising complex networks is…

Social and Information Networks · Computer Science 2023-02-16 Jérôme Kunegis , Pawan Kumar , Jun Sun , Anna Samoilenko , Giuseppe Pirró

Scientific communities naturally tend to organize around data ecosystems created by the combination of their observational devices, their data repositories, and the workflows essential to carry their research from observation to discovery.…

Networking and Internet Architecture · Computer Science 2021-06-30 Mark Asch , François Bodin , Micah Beck , Terry Moore , Michela Taufer , Martin Swany , Jean-Pierre Vilotte

Infomap clustering finds the community structures that minimize the expected description length of a random walk trajectory; algorithms for infomap clustering run fast in practice for large graphs. In this paper we leverage the…

Data Structures and Algorithms · Computer Science 2019-08-23 Seok-Hee Hong , Peter Eades , Marnijati Torkel , Ziyang Wang , David Chae , Sungpack Hong , Daniel Langerenken , Hassan Chafi

Comprehensive literature review requires synthesizing vast amounts of research -- a labor intensive and cognitively demanding process. Most prior work focuses either on helping researchers deeply understand a few papers (e.g., for triaging…

Human-Computer Interaction · Computer Science 2025-04-28 Raymond Fok , Joseph Chee Chang , Marissa Radensky , Pao Siangliulue , Jonathan Bragg , Amy X. Zhang , Daniel S. Weld

Analyzing large complex image collections in domains like forensics, accident investigation, or social media analysis involves interpreting intricate, overlapping relationships among images. Traditional clustering and classification methods…

Graphics · Computer Science 2025-10-24 Floris Gisolf , Zeno J. M. H. Geradts , Marcel Worring

Scientific research's mandate is to comprehend and explore the world, as well as to improve it based on experience and knowledge. Knowledge embedding and knowledge discovery are two significant methods of integrating knowledge and data.…

Artificial Intelligence · Computer Science 2022-04-12 Yuntian Chen , Dongxiao Zhang

Context. Filamentary structures appear to be ubiquitous in the interstellar medium. Being able to detect and characterize them is the first step toward understanding their origin, their evolution, and their role in the Galactic cycle of…

Astrophysics of Galaxies · Physics 2022-12-14 J. -S. Carrière , L. Montier , K. Ferrière , I. Ristorcelli

Analyzing literature involves tracking interactions between characters, locations, and themes. Visualization has the potential to facilitate the mapping and analysis of these complex relationships, but capturing structured information from…

Human-Computer Interaction · Computer Science 2025-08-12 Catherine Yeh , Tara Menon , Robin Singh Arya , Helen He , Moira Weigel , Fernanda Viégas , Martin Wattenberg

Many data sets, crucial for today's applications, consist essentially of enormous networks, containing millions or even billions of elements. Having the possibility of visualizing such networks is of paramount importance. We propose an…

Data Structures and Algorithms · Computer Science 2023-07-25 Giuseppe Di Battista , Fabrizio Grosso , Silvia Montorselli , Maurizio Patrignani

Progress in science is deeply bound to the effective use of high-performance computing infrastructures and to the efficient extraction of knowledge from vast amounts of data. Such data comes from different sources that follow a cycle…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-06-15 Rosa M Badia , Jorge Ejarque , Francesc Lordan , Daniele Lezzi , Javier Conejero , Javier Álvarez Cid-Fuentes , Yolanda Becerra , Anna Queralt

The increasing reliance on Large Language Models (LLMs) for health information seeking can pose severe risks due to the potential for misinformation and the complexity of these topics. This paper introduces KNOWNET a visualization system…

Human-Computer Interaction · Computer Science 2024-09-27 Youfu Yan , Yu Hou , Yongkang Xiao , Rui Zhang , Qianwen Wang

Human knowledge provides a formal understanding of the world. Knowledge graphs that represent structural relations between entities have become an increasingly popular research direction towards cognition and human-level intelligence. In…

Computation and Language · Computer Science 2021-04-02 Shaoxiong Ji , Shirui Pan , Erik Cambria , Pekka Marttinen , Philip S. Yu
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