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Related papers: NMRPy: a novel NMR scripting system to implement a…

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Scripting languages such as Python and R have been widely adopted as tools for the productive development of scientific software because of the power and expressiveness of the languages and available libraries. However, deploying scripted…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-07-08 Justin M. Wozniak , Timothy G. Armstrong , Ketan C. Maheshwari , Daniel S. Katz , Michael Wilde , Ian T. Foster

Neuromorphic computing systems uses non-volatile memory (NVM) to implement high-density and low-energy synaptic storage. Elevated voltages and currents needed to operate NVMs cause aging of CMOS-based transistors in each neuron and synapse…

Neural and Evolutionary Computing · Computer Science 2021-05-06 Shihao Song , Jui Hanamshet , Adarsha Balaji , Anup Das , Jeffrey L. Krichmar , Nikil D. Dutt , Nagarajan Kandasamy , Francky Catthoor

Liquid state NMR is a powerful tool for the analysis of complex mixtures of unknown molecules. This capacity has been used in many analytical approaches: metabolomics, identification of active compounds in natural extracts, characterization…

Raman spectroscopy provides a vibrational profile of the molecules and thus can be used to uniquely identify different kind of materials. This sort of fingerprinting molecules has thus led to widespread application of Raman spectrum in…

Most learning-based approaches to complex physical reasoning sidestep the crucial problem of parameter identification (e.g., mass, friction) that governs scene dynamics, despite its importance in real-world applications such as collision…

Machine Learning · Computer Science 2026-04-27 Anoop Cherian , Radu Corcodel , Siddarth Jain , Diego Romeres

Data movement between memory and processors is a major bottleneck in modern computing systems. The processing-in-memory (PIM) paradigm aims to alleviate this bottleneck by performing computation inside memory chips. Real PIM hardware (e.g.,…

Hardware Architecture · Computer Science 2023-10-04 Jinfan Chen , Juan Gómez-Luna , Izzat El Hajj , Yuxin Guo , Onur Mutlu

Computational protein design is experiencing a transformation driven by AI/ML. However, the range of potential protein sequences and structures is astronomically vast, even for moderately sized proteins. Hence, achieving convergence between…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-09 Aymen Alsaadi , Jonathan Ash , Mikhail Titov , Matteo Turilli , Andre Merzky , Shantenu Jha , Sagar Khare

Analysis of the sequence-structure relationship in RNA molecules are essential to evolutionary studies but also to concrete applications such as error-correction methodologies in sequencing technologies. The prohibitive sizes of the…

Quantitative Methods · Quantitative Biology 2013-05-31 Vladimir Reinharz , Yann Ponty , Jérôme Waldispühl

This paper introduces a new framework of fast and efficient sensing matrices for practical compressive sensing, called Structurally Random Matrix (SRM). In the proposed framework, we pre-randomize a sensing signal by scrambling its samples…

Information Theory · Computer Science 2015-05-28 Thong T. Do , Lu Gan , Nam H. Nguyen , Trac D. Tran

Quantum computers have leaped from the theoretical realm into a race to large-scale implementations. This is due to the promise of revolutionary speedups, where achieving such speedup requires designing an algorithm that harnesses the…

Robotic Process Automation (RPA) systems face challenges in handling complex processes and diverse screen layouts that require advanced human-like decision-making capabilities. These systems typically rely on pixel-level encoding through…

Robotics · Computer Science 2024-05-22 Arushi Jain , Shubham Paliwal , Monika Sharma , Lovekesh Vig , Gautam Shroff

Complex heterogeneous dynamic networks like knowledge graphs are powerful constructs that can be used in modeling data provenance from computer systems. From a security perspective, these attributed graphs enable causality analysis and…

Cryptography and Security · Computer Science 2022-03-08 Maya Kapoor , Joshua Melton , Michael Ridenhour , Mahalavanya Sriram , Thomas Moyer , Siddharth Krishnan

We explore the interplay of quantum computing and machine learning to advance experimental protocols for observing measurement-induced phase transitions (MIPT) in quantum devices. In particular, we focus on trapped ion monitored circuits…

Quantum Physics · Physics 2025-11-07 Yangrui Hu , Yi Hong Teoh , William Witczak-Krempa , Roger G. Melko

Region-based memory management (RBMM) is a form of compile time memory management, well-known from the functional programming world. In this paper we describe our work on implementing RBMM for the logic programming language Mercury. One…

Programming Languages · Computer Science 2012-03-08 Quan Phan , Gerda Janssens , Zoltan Somogyi

Software development is shifting from traditional programming to AI-integrated applications that leverage generative AI and large language models (LLMs) during runtime. However, integrating LLMs remains complex, requiring developers to…

PLUMED-GUI is an interactive environment to develop and test complex PLUMED scripts within the Visual Molecular Dynamics (VMD) environment. Computational biophysicists can take advantage of both PLUMED's rich syntax to define collective…

Computational Physics · Physics 2013-12-12 Toni Giorgino

Resting state fMRI is an imaging modality which reveals brain activity localization through signal changes, in what is known as Resting State Networks (RSNs). This technique is gaining popularity in neurosurgical pre-planning to visualize…

Machine Learning · Computer Science 2022-09-22 Sejal Ghate , Alberto Santamaria-Pang , Ivan Tarapov , Haris I Sair , Craig K Jones

InferPy is a Python package for probabilistic modeling with deep neural networks. It defines a user-friendly API that trades-off model complexity with ease of use, unlike other libraries whose focus is on dealing with very general…

Machine Learning · Computer Science 2020-02-13 Javier Cózar , Rafael Cabañas , Antonio Salmerón , Andrés R. Masegosa

Neuromorphic computing is a relatively new discipline of computer science, where the principles of biological brain's computation and memory are used to create a new way of processing information, based on networks of spiking neurons. Those…

Hardware Architecture · Computer Science 2026-05-19 Wiktor J. Szczerek , Artur Podobas

AI-Integrated programming is emerging as a foundational paradigm for building intelligent systems with large language models (LLMs). Recent approaches such as Meaning Typed Programming (MTP) automate prompt generation by leveraging the…

Software Engineering · Computer Science 2025-11-25 Jayanaka L. Dantanarayana , Savini Kashmira , Thakee Nathees , Zichen Zhang , Krisztian Flautner , Lingjia Tang , Jason Mars
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