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Diffusion-weighted MRI is the forerunner of the rapidly developed microstructural MRI aimed at in vivo evaluation of the cellular tissue architecture. This brief review focuses on the spatiotemporal scales of the microstructure that are…

Medical Physics · Physics 2020-08-14 Valerij G. Kiselev

The Brain Imaging Data Structure (BIDS) is a community-driven standard for the organization of data and metadata from a growing range of neuroscience modalities. This paper is meant as a history of how the standard has developed and grown…

Other Quantitative Biology · Quantitative Biology 2024-10-07 Russell A. Poldrack , Christopher J. Markiewicz , Stefan Appelhoff , Yoni K. Ashar , Tibor Auer , Sylvain Baillet , Shashank Bansal , Leandro Beltrachini , Christian G. Benar , Giacomo Bertazzoli , Suyash Bhogawar , Ross W. Blair , Marta Bortoletto , Mathieu Boudreau , Teon L. Brooks , Vince D. Calhoun , Filippo Maria Castelli , Patricia Clement , Alexander L Cohen , Julien Cohen-Adad , Sasha D'Ambrosio , Gilles de Hollander , María de la iglesia-Vayá , Alejandro de la Vega , Arnaud Delorme , Orrin Devinsky , Dejan Draschkow , Eugene Paul Duff , Elizabeth DuPre , Eric Earl , Oscar Esteban , Franklin W. Feingold , Guillaume Flandin , anthony galassi , Giuseppe Gallitto , Melanie Ganz , Rémi Gau , James Gholam , Satrajit S. Ghosh , Alessio Giacomel , Ashley G Gillman , Padraig Gleeson , Alexandre Gramfort , Samuel Guay , Giacomo Guidali , Yaroslav O. Halchenko , Daniel A. Handwerker , Nell Hardcastle , Peer Herholz , Dora Hermes , Christopher J. Honey , Robert B. Innis , Horea-Ioan Ioanas , Andrew Jahn , Agah Karakuzu , David B. Keator , Gregory Kiar , Balint Kincses , Angela R. Laird , Jonathan C. Lau , Alberto Lazari , Jon Haitz Legarreta , Adam Li , Xiangrui Li , Bradley C. Love , Hanzhang Lu , Camille Maumet , Giacomo Mazzamuto , Steven L. Meisler , Mark Mikkelsen , Henk Mutsaerts , Thomas E. Nichols , Aki Nikolaidis , Gustav Nilsonne , Guiomar Niso , Martin Norgaard , Thomas W Okell , Robert Oostenveld , Eduard Ort , Patrick J. Park , Mateusz Pawlik , Cyril R. Pernet , Franco Pestilli , Jan Petr , Christophe Phillips , Jean-Baptiste Poline , Luca Pollonini , Pradeep Reddy Raamana , Petra Ritter , Gaia Rizzo , Kay A. Robbins , Alexander P. Rockhill , Christine Rogers , Ariel Rokem , Chris Rorden , Alexandre Routier , Jose Manuel Saborit-Torres , Taylor Salo , Michael Schirner , Robert E. Smith , Tamas Spisak , Julia Sprenger , Nicole C. Swann , Martin Szinte , Sylvain Takerkart , Bertrand Thirion , Adam G. Thomas , Sajjad Torabian , Gael Varoquaux , Bradley Voytek , Julius Welzel , Martin Wilson , Tal Yarkoni , Krzysztof J. Gorgolewski

Ultrasound is a widely accessible and cost-effective medical imaging tool commonly used for prenatal evaluation of the fetal brain. However, it has limitations, particularly in the third trimester, where the complexity of the fetal brain…

Image and Video Processing · Electrical Eng. & Systems 2025-04-04 Naomi Silverstein , Efrat Leibowitz , Ron Beloosesky , Haim Azhari

Diffusion magnetic resonance imaging (MRI) is the only imaging modality for non-invasive movement detection of in vivo water molecules, with significant clinical and research applications. Diffusion weighted imaging (DWI) MRI acquired by…

A large number of mathematical models have been proposed to describe the measured signal in diffusion-weighted (DW) magnetic resonance imaging (MRI) and infer properties about the white matter microstructure. However, a head-to-head…

Diffusion tensor imaging (DTI) holds significant importance in clinical diagnosis and neuroscience research. However, conventional model-based fitting methods often suffer from sensitivity to noise, leading to decreased accuracy in…

Computer Vision and Pattern Recognition · Computer Science 2024-09-05 Jialong Li , Zhicheng Zhang , Yunwei Chen , Qiqi Lu , Ye Wu , Xiaoming Liu , QianJin Feng , Yanqiu Feng , Xinyuan Zhang

Diffusion MRI is the modality of choice to study alterations of white matter. In past years, various works have used diffusion MRI for automatic classification of AD. However, classification performance obtained with different approaches is…

Magnetic resonance imaging technique known as DWI (diffusion-weighted imaging) allows measurement of water diffusivity on a pixel basis for evaluating pathology throughout the body and is now routinely incorporated into many body MRI…

Medical Physics · Physics 2016-11-28 Andrea Barucci , Roberto Carpi , Marco Esposito , Maristella Olmastroni , Giovanna Zatelli

Diffusion-weighted magnetic resonance imaging (dMRI) allows non-invasive investigation of whole-brain connectivity, which can potentially help to reveal the brain's global network architecture and abnormalities involved in neurological and…

Diffusion MRI (dMRI) is a unique imaging technique for in vivo characterization of tissue microstructure and white matter pathways. However, its relatively long acquisition time implies greater motion artifacts when imaging, for example,…

Medical Physics · Physics 2020-02-26 Yoonmi Hong , Wei-Tang Chang , Geng Chen , Ye Wu , Weili Lin , Dinggang Shen , Pew-Thian Yap

Neuron segmentation in electron microscopy (EM) aims to reconstruct the complete neuronal connectome; however, current deep learning-based methods are limited by their reliance on large-scale training data and extensive, time-consuming…

Computer Vision and Pattern Recognition · Computer Science 2026-01-23 Liuyun Jiang , Yanchao Zhang , Jinyue Guo , Yizhuo Lu , Ruining Zhou , Hua Han

Diffusion-weighted magnetic resonance imaging in brain white matter probes tissue microstructure and allows for the estimation of compartmental diffusion parameters. Recently, it became apparent that traditional single-direction diffusion…

Biological Physics · Physics 2018-09-20 Marco Reisert , Valerij G. Kiselev , Bibek Dhital

Data standardization has become one of the leading methods neuroimaging researchers rely on for data sharing and reproducibility. Data standardization promotes a common framework through which researchers can utilize others' data. Yet, as…

Image compression technology eliminates redundant information to enable efficient transmission and storage of images, serving both machine vision and human visual perception. For years, image coding focused on human perception has been…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Takahiro Shindo , Yui Tatsumi , Taiju Watanabe , Hiroshi Watanabe

We propose an image-conditioned diffusion model to estimate high angular resolution diffusion weighted imaging (DWI) from a low angular resolution acquisition. Our model, which we call QID$^2$, takes as input a set of low angular resolution…

Image and Video Processing · Electrical Eng. & Systems 2024-09-05 Zijian Chen , Jueqi Wang , Archana Venkataraman

Acquiring accurate channel state information (CSI) is critical for reliable and efficient wireless communication, but challenges such as high pilot overhead and channel aging hinder timely and accurate CSI acquisition. CSI prediction, which…

Signal Processing · Electrical Eng. & Systems 2025-10-14 Mehdi Sattari , Javad Aliakbari , Alexandre Graell i Amat , Tommy Svensson

Diffusion-weighted magnetic resonance imaging (DW-MRI) is a non-invasive way of imaging white matter tracts in the human brain. DW-MRIs are usually acquired using echo-planar imaging (EPI) with high gradient fields, which could introduce…

Image and Video Processing · Electrical Eng. & Systems 2023-04-04 Zhangxing Bian , Muhan Shao , Aaron Carass , Jerry L. Prince

Data-dependent metrics are powerful tools for learning the underlying structure of high-dimensional data. This article develops and analyzes a data-dependent metric known as diffusion state distance (DSD), which compares points using a…

Machine Learning · Statistics 2020-03-10 Lenore Cowen , Kapil Devkota , Xiaozhe Hu , James M. Murphy , Kaiyi Wu

Brain network analysis is essential for diagnosing and intervention for Alzheimer's disease (AD). However, previous research relied primarily on specific time-consuming and subjective toolkits. Only few tools can obtain the structural brain…

Artificial Intelligence · Computer Science 2023-03-14 Xuhang Chen , Baiying Lei , Chi-Man Pun , Shuqiang Wang

Segmentation of brain structures from MRI is crucial for evaluating brain morphology, yet existing CNN and transformer-based methods struggle to delineate complex structures accurately. While current diffusion models have shown promise in…

Image and Video Processing · Electrical Eng. & Systems 2025-07-01 Qilong Xing , Zikai Song , Yuteng Ye , Yuke Chen , Youjia Zhang , Na Feng , Junqing Yu , Wei Yang