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Deep learning methods are achieving ever-increasing performance on many artificial intelligence tasks. A major limitation of deep models is that they are not amenable to interpretability. This limitation can be circumvented by developing…

Machine Learning · Computer Science 2022-07-05 Hao Yuan , Haiyang Yu , Shurui Gui , Shuiwang Ji

We introduce GraphSL, a new library for studying the graph source localization problem. graph diffusion and graph source localization are inverse problems in nature: graph diffusion predicts information diffusions from information sources,…

Machine Learning · Computer Science 2024-07-30 Junxiang Wang , Liang Zhao

Accurate modeling of realistic network topologies is essential for evaluating novel Internet solutions. Current topology generators, notably scale-free-based models, fail to capture multiple properties of intra-AS topologies. While…

Networking and Internet Architecture · Computer Science 2024-02-28 Caio Vinicius Dadauto , Nelson Luis Saldanha da Fonseca , Ricardo da Silva Torres

Anomaly detection is a crucial task in complex distributed systems. A thorough understanding of the requirements and challenges of anomaly detection is pivotal to the security of such systems, especially for real-world deployment. While…

We present Ringo, a system for analysis of large graphs. Graphs provide a way to represent and analyze systems of interacting objects (people, proteins, webpages) with edges between the objects denoting interactions (friendships, physical…

Networks provide a meaningful way to represent and analyze complex biological information, but the methodological details of network-based tools are often described for a technical audience. Graphery is a hands-on tutorial webserver…

Molecular Networks · Quantitative Biology 2024-02-19 Heyuan Zeng , Jinbiao Zhang , Gabriel A. Preising , Tobias Rubel , Pramesh Singh , Anna Ritz

Graph Neural Networks (GNNs) are powerful tools for processing relational data but often struggle to generalize to unseen graphs, giving rise to the development of Graph Foundational Models (GFMs). However, current GFMs are challenged by…

Machine Learning · Computer Science 2026-05-25 Weishuo Ma , Yanbo Wang , Xiyuan Wang , Lei Zou , Muhan Zhang

Augmenting large language models (LLMs) with browsing tools substantially improves their potential as deep search agents to solve complex, real-world tasks. Yet, open LLMs still perform poorly in such settings due to limited long-horizon…

Computation and Language · Computer Science 2025-10-15 Rui Lu , Zhenyu Hou , Zihan Wang , Hanchen Zhang , Xiao Liu , Yujiang Li , Shi Feng , Jie Tang , Yuxiao Dong

Identifying vulnerable code is a precautionary measure to counter software security breaches. Tedious expert effort has been spent to build static analyzers, yet insecure patterns are barely fully enumerated. This work explores a deep…

Artificial Intelligence · Computer Science 2021-09-09 Yufan Zhuang , Sahil Suneja , Veronika Thost , Giacomo Domeniconi , Alessandro Morari , Jim Laredo

Graph neural networks (GNNs) have attracted much attention due to their ability to leverage the intrinsic geometries of the underlying data. Although many different types of GNN models have been developed, with many benchmarking procedures…

Graph unlearning emerges as a crucial advancement in the pursuit of responsible AI, providing the means to remove sensitive data traces from trained models, thereby upholding the \textit{right to be forgotten}. It is evident that graph…

Machine Learning · Computer Science 2025-10-16 Anwar Said , Ngoc N. Tran , Yuying Zhao , Tyler Derr , Mudassir Shabbir , Waseem Abbas , Xenofon Koutsoukos

Academic research generates diverse data sources, and as researchers increasingly use machine learning to assist research tasks, a crucial question arises: Can we build a unified data interface to support the development of machine learning…

Computation and Language · Computer Science 2025-12-01 Jingjun Xu , Chongshan Lin , Haofei Yu , Tao Feng , Jiaxuan You

Graph Neural Networks (GNNs) are emerging as a powerful tool for learning from graph-structured data and performing sophisticated inference tasks in various application domains. Although GNNs have been shown to be effective on modest-sized…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-05-29 Jeongmin Brian Park , Vikram Sharma Mailthody , Zaid Qureshi , Wen-mei Hwu

Dynamic graph neural networks (DGNNs) have emerged and been widely deployed in various web applications (e.g., Reddit) to serve users (e.g., personalized content delivery) due to their remarkable ability to learn from complex and dynamic…

Machine Learning · Computer Science 2025-02-04 He Zhang , Bang Wu , Xiangwen Yang , Xingliang Yuan , Xiaoning Liu , Xun Yi

Graph machine learning has been extensively studied in both academia and industry. However, in the literature, most existing graph machine learning models are designed to conduct training with data samples in a random order, which may…

Machine Learning · Computer Science 2024-03-14 Haoyang Li , Xin Wang , Wenwu Zhu

Learning the dependence structure among variables in complex systems is a central problem across medical, natural, and social sciences. These structures can be naturally represented by graphs, and the task of inferring such graphs from data…

Methodology · Statistics 2026-04-02 Lucas Kook , Søren Wengel Mogensen

Graph algorithms can be expressed in terms of linear algebra. GraphBLAS is a library of low-level building blocks for such algorithms that targets algorithm developers. LAGraph builds on top of the GraphBLAS to target users of graph…

Mathematical Software · Computer Science 2021-04-06 Gábor Szárnyas , David A. Bader , Timothy A. Davis , James Kitchen , Timothy G. Mattson , Scott McMillan , Erik Welch

Graph Neural Networks (GNNs) have recently shown to be powerful tools for representing and analyzing graph data. So far GNNs is becoming an increasingly critical role in software engineering including program analysis, type inference, and…

Artificial Intelligence · Computer Science 2021-02-17 Jintang Li , Kun Xu , Liang Chen , Zibin Zheng , Xiao Liu

Graph neural networks (GNNs) are among the most powerful tools in deep learning. They routinely solve complex problems on unstructured networks, such as node classification, graph classification, or link prediction, with high accuracy.…

Machine Learning · Computer Science 2023-08-21 Maciej Besta , Torsten Hoefler

Recent years have seen substantial progress in neural generation of text, images, and audio, supported by mature training pipelines and large-scale optimization. For graphs, however, comparable progress has been more limited. We attribute…

Computer Vision and Pattern Recognition · Computer Science 2026-05-21 André Eberhard , Gerhard Neumann , Pascal Friederich
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