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Recent years have witnessed the success of deep neural networks in many research areas. The fundamental idea behind the design of most neural networks is to learn similarity patterns from data for prediction and inference, which lacks the…

Machine Learning · Computer Science 2020-08-24 Shaoyun Shi , Hanxiong Chen , Weizhi Ma , Jiaxin Mao , Min Zhang , Yongfeng Zhang

In Textual question answering (TQA) systems, complex questions often require retrieving multiple textual fact chains with multiple reasoning steps. While existing benchmarks are limited to single-chain or single-hop retrieval scenarios. In…

Computation and Language · Computer Science 2023-05-24 Minjun Zhu , Yixuan Weng , Shizhu He , Kang Liu , Jun Zhao

Tools to explore scientific literature are essential for scientists, especially in biomedicine, where about a million new papers are published every year. Many such tools provide users the ability to search for specific entities (e.g.…

Computation and Language · Computer Science 2021-07-05 Sunil Mohan , Rico Angell , Nick Monath , Andrew McCallum

In this paper, we study the problem of learning probabilistic logical rules for inductive and interpretable link prediction. Despite the importance of inductive link prediction, most previous works focused on transductive link prediction…

Machine Learning · Computer Science 2019-11-04 Ali Sadeghian , Mohammadreza Armandpour , Patrick Ding , Daisy Zhe Wang

In the last two decades we are witnessing a huge increase of valuable big data structured in the form of graphs or networks. To apply traditional machine learning and data analytic techniques to such data it is necessary to transform graphs…

Machine Learning · Computer Science 2024-03-22 Aleksandar Tomčić , Miloš Savić , Miloš Radovanović

We study the problem of learning to reason in large scale knowledge graphs (KGs). More specifically, we describe a novel reinforcement learning framework for learning multi-hop relational paths: we use a policy-based agent with continuous…

Computation and Language · Computer Science 2018-07-10 Wenhan Xiong , Thien Hoang , William Yang Wang

Recent interest in Knowledge Base Completion (KBC) has led to a plethora of approaches based on reinforcement learning, inductive logic programming and graph embeddings. In particular, rule-based KBC has led to interpretable rules while…

Artificial Intelligence · Computer Science 2021-09-21 Prithviraj Sen , Breno W. S. R. Carvalho , Ibrahim Abdelaziz , Pavan Kapanipathi , Francois Luus , Salim Roukos , Alexander Gray

Cells regulate themselves via dizzyingly complex biochemical processes called signaling pathways. These are usually depicted as a network, where nodes represent proteins and edges indicate their influence on each other. In order to…

Molecular Networks · Quantitative Biology 2021-01-13 David Merrell , Anthony Gitter

The medical community believes binary medical event outcomes in EHR data contain sufficient information for making a sensible recommendation. However, there are two challenges to effectively utilizing such data: (1) modeling the…

Artificial Intelligence · Computer Science 2024-09-12 Xihao Piao , Pei Gao , Zheng Chen , Lingwei Zhu , Yasuko Matsubara , Yasushi Sakurai , Jimeng Sun

Pre-trained language models (LMs) are able to perform complex reasoning without explicit fine-tuning. To understand how pre-training with a next-token prediction objective contributes to the emergence of such reasoning capability, we…

Machine Learning · Computer Science 2024-06-24 Xinyi Wang , Alfonso Amayuelas , Kexun Zhang , Liangming Pan , Wenhu Chen , William Yang Wang

Multimodal pathological image understanding has garnered widespread interest due to its potential to improve diagnostic accuracy and enable personalized treatment through integrated visual and textual data. However, existing methods exhibit…

Computer Vision and Pattern Recognition · Computer Science 2025-05-22 Zhe Xu , Cheng Jin , Yihui Wang , Ziyi Liu , Hao Chen

Large Language Models (LLMs) have shown strong potential in complex medical reasoning yet face diminishing gains under inference scaling laws. While existing studies augment LLMs with various knowledge types, it remains unclear how…

Artificial Intelligence · Computer Science 2026-02-10 Yu Zhao , Hao Guan , Yongcheng Jing , Ying Zhang , Dacheng Tao

Much of biomedical and healthcare data is encoded in discrete, symbolic form such as text and medical codes. There is a wealth of expert-curated biomedical domain knowledge stored in knowledge bases and ontologies, but the lack of reliable…

Artificial Intelligence · Computer Science 2020-06-25 David Chang , Ivana Balazevic , Carl Allen , Daniel Chawla , Cynthia Brandt , Richard Andrew Taylor

Large Language Models (LLMs) have achieved impressive results in various tasks but struggle with hallucination problems and lack of relevant knowledge, especially in deep complex reasoning and knowledge-intensive tasks. Knowledge Graphs…

Computation and Language · Computer Science 2025-03-14 Xingyu Tan , Xiaoyang Wang , Qing Liu , Xiwei Xu , Xin Yuan , Wenjie Zhang

Multi-hop machine reading comprehension is a challenging task in natural language processing as it requires more reasoning ability across multiple documents. Spectral models based on graph convolutional networks have shown good inferring…

Computation and Language · Computer Science 2023-07-24 Peng Gao , Feng Gao , Peng Wang , Jian-Cheng Ni , Fei Wang , Hamido Fujita

The number of biomedical research articles published has doubled in the past 20 years. Search engine based systems naturally center around searching, but researchers may not have a clear goal in mind, or the goal may be expressed in a query…

Digital Libraries · Computer Science 2017-10-25 Jessica Perrie , Yanqi Hao , Zack Hayat , Recep Colak , Kelly Lyons , Shankar Vembu , Sam Molyneux

Planning is one of the most critical tasks in autonomous systems, where even a small error can lead to major failures or million-dollar losses. Current state-of-the-art neural planning approaches struggle with complex domains, producing…

Artificial Intelligence · Computer Science 2025-08-20 Ronit Virwani , Ruchika Suryawanshi

Real-world reasoning often requires combining information across modalities, connecting textual context with visual cues in a multi-hop process. Yet, most multimodal benchmarks fail to capture this ability: they typically rely on single…

Machine Learning · Computer Science 2026-04-03 Junyoung Sung , Seungwoo Lyu , Minjun Kim , Sumin An , Arsha Nagrani , Paul Hongsuck Seo

Reasoning ability is one of the most crucial capabilities of a foundation model, signifying its capacity to address complex reasoning tasks. Chain-of-Thought (CoT) technique is widely regarded as one of the effective methods for enhancing…

Computation and Language · Computer Science 2023-08-14 Fanglong Yao , Changyuan Tian , Jintao Liu , Zequn Zhang , Qing Liu , Li Jin , Shuchao Li , Xiaoyu Li , Xian Sun

Graph Neural Networks share with Logic Programming several key relational inference mechanisms. The datasets on which they are trained and evaluated can be seen as database facts containing ground terms. This makes possible modeling their…

Logic in Computer Science · Computer Science 2022-08-08 Paul Tarau