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The emergent dynamics of complex systems often arise from the internal dynamical interactions among different elements and hence is to be modeled using multiple variables that represent the different dynamical processes. When such systems…

Chaotic Dynamics · Physics 2024-11-05 Shivam Kumar , R. Misra , G. Ambika

Intercellular exchange networks are essential for the adaptive capabilities of populations of cells. While diffusional exchanges have traditionally been difficult to map, recent advances in nanotechnology enable precise probing of exchange…

Statistical Mechanics · Physics 2024-12-13 Luís C. F. Latoski , Andrea De Martino , Daniele De Martino

Collective behaviour in biological systems pitches us against theoretical challenges way beyond the borders of ordinary statistical physics. The lack of concepts like scaling and renormalization is particularly grievous, as it forces us to…

Statistical Mechanics · Physics 2017-10-11 A. Cavagna , D. Conti , C. Creato , L. Del Castello , I. Giardina , T. S. Grigera , S. Melillo , L. Parisi , M. Viale

Main aim of this topical issue is to report recent advances in noisy nonequilibrium processes useful to describe the dynamics of ecological systems and to address the mechanisms of spatio-temporal pattern formation in ecology both from the…

Biological Physics · Physics 2009-11-13 Astero Provata , Igor M. Sokolov , Bernardo Spagnolo

The response of ecosystems to perturbations is considered from a thermodynamic perspective by acknowledging that, as for all macroscopic systems and processes, the dynamics and stability of ecosystems is subject to definite thermodynamic…

Biological Physics · Physics 2008-09-26 K. Michaelian , V. Alonso Chavez

The ICH E9(R1) addendum provides guidelines on accounting for intercurrent events in clinical trials using the estimands framework. However, there has been limited attention to the estimands framework for meta-analysis. Using treatment…

The aim of this manuscript is to contain the arguments and define the theoretical objects for building a general framework to model population dynamics from the ground up, relying mainly on the probabilistic landscapes defining the dynamics…

Populations and Evolution · Quantitative Biology 2023-04-26 Gui Araujo

In an ecological context, panel data arise when time series measurements are made on a collection of ecological processes. Each process may correspond to a spatial location for field data, or to an experimental ecosystem in a designed…

Applications · Statistics 2025-06-10 Bo Yang , Jesse Wheeler , Meghan A. Duffy , Aaron A. King , Edward L. Ionides

We introduce a simulation environment to facilitate research into emergent collective behaviour, with a focus on replicating the dynamics of ant colonies. By leveraging real-world data, the environment simulates a target ant trail that a…

Multiagent Systems · Computer Science 2024-10-22 Michael Crosscombe , Ilya Horiguchi , Norihiro Maruyama , Shigeto Dobata , Takashi Ikegami

We consider a dense assembly of repulsive particles whose fluctuating sizes are subject to an energetic landscape that defines three species: two distinct states of particles with a finite size, and point particles as an intermediate state…

Soft Condensed Matter · Physics 2025-04-29 Yiwei Zhang , Alessandro Manacorda , Étienne Fodor

Understanding the dynamics of metapopulations close to extinction is of vital importance for management. Levins-like models, in which local patches are treated as either occupied or empty, have been used extensively for this purpose, but…

Populations and Evolution · Quantitative Biology 2016-04-26 F. Elias Wolff , A. Eriksson , A. Manica , B. Mehlig

Whereas the importance of transient dynamics to the functionality and management of complex systems has been increasingly recognized, most of the studies are based on models. Yet in realistic situations the models are often unknown and what…

Adaptation and Self-Organizing Systems · Physics 2021-10-25 Huawei Fan , Liang Wang , Yao Du , Yafeng Wang , Jinghua Xiao , Xingang Wang

Motivated by the climate crisis that is currently ravaging the planet, we propose and analyze a novel framework for the evolution of anthropogenic climate impact in which the evolution of human environmental behavior and environmental…

Dynamical Systems · Mathematics 2022-11-22 Kathinka Frieswijk , Lorenzo Zino , A. Stephen Morse , Ming Cao

The complex interplay between population movements in space and non-homogeneous mixing patterns have so far hindered the fundamental understanding of the conditions for spatial invasion through a general theoretical framework. To address…

Physics and Society · Physics 2014-01-21 Andrea Apolloni , Chiara Poletto , Jose' J. Ramasco , Pablo Jensen , Vittoria Colizza

The length-scale dependence of the dynamic entropy is studied in a molecular dynamics simulation of a binary Lennard-Jones liquid above the mode-coupling critical temperature $T_c$. A number of methods exist for estimating the entropy of…

Soft Condensed Matter · Physics 2009-10-31 Paolo Allegrini , Jack F. Douglas , Sharon C. Glotzer

In the present paper, our goal is to establish a framework for the mathematical modelling and the analysis of the spread of an epidemic in a large population commuting regularly, typically along a time-periodic pattern, as is roughly…

Populations and Evolution · Quantitative Biology 2024-08-29 Pierre-Alexandre Bliman , Boureima Sangaré , Assane Savadogo

This paper proposes a new approach, grounded in Satisfiability Modulo Theories (SMT), to study the transient of a Max-Plus Linear (MPL) system, that is the number of steps leading to its periodic regime. Differently from state-of-the-art…

Systems and Control · Electrical Eng. & Systems 2020-07-09 Alessandro Abate , Alessandro Cimatti , Andrea Micheli , Muhammad Syifa'ul Mufid

We study the long-time hydrodynamic behavior of systems of multi-species which arise from agent-based description of alignment dynamics. The interaction between species is governed by an array of symmetric communication kernels. We prove…

Analysis of PDEs · Mathematics 2022-09-07 Jingcheng Lu , Eitan Tadmor

The implementation of effective protected areas is one of the central goals of modern conservation biology. In the context of fisheries management and marine ecosystem conservation, marine reserves often play a significant role to achieve…

Populations and Evolution · Quantitative Biology 2016-01-05 Nao Takashina

Biological systems operate under simultaneous energetic and informational constraints, yet direct evidence that such constraints shape real metabolic networks is limited. The Network-Weighted Action Principle predicts that networks under…

Molecular Networks · Quantitative Biology 2026-05-08 Martin G. Frasch