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The paper describes an algorithm to compute a consensus sequence from a set of DNA sequences of approximatively identical length generated by 3rd sequencing generation technologies. Its purpose targets DNA storage and is guided by specific…

Data Structures and Algorithms · Computer Science 2021-05-12 Dominique Lavenier

With the growth of computer vision based applications and services, an explosive amount of images have been uploaded to cloud servers which host such computer vision algorithms, usually in the form of deep learning models. JPEG has been…

Multimedia · Computer Science 2019-09-19 Hongshan Li , Yu Guo , Zhi Wang , Shutao Xia , Wenwu Zhu

Image binarization techniques are being popularly used in enhancement of noisy and/or degraded images catering different Document Image Anlaysis (DIA) applications like word spotting, document retrieval, and OCR. Most of the existing…

Computer Vision and Pattern Recognition · Computer Science 2022-09-14 Bulla Rajesh , Manav Kamlesh Agrawal , Milan Bhuva , Kisalaya Kishore , Mohammed Javed

Synthetic DNA can in principle be used for the archival storage of arbitrary data. Because errors are introduced during DNA synthesis, storage, and sequencing, an error-correcting code (ECC) is necessary for error-free recovery of the data.…

Quantitative Methods · Quantitative Biology 2018-12-05 William H. Press , John A. Hawkins

Recently, DNA storage has surfaced as a promising alternative for data storage, presenting notable benefits in terms of storage capacity, cost-effectiveness in maintenance, and the capability for parallel replication. Mathematically, the…

Information Theory · Computer Science 2024-01-31 Yi Lu , Yun Ma , Chenghao Li , Xin Zhang , Guangxiang Si

Data-efficient image classification is a challenging task that aims to solve image classification using small training data. Neural network-based deep learning methods are effective for image classification, but they typically require…

Neural and Evolutionary Computing · Computer Science 2022-12-05 Ying Bi , Bing Xue , Mengjie Zhang

DNA-based data storage systems face practical challenges due to the high cost of DNA synthesis. A strategy to address the problem entails encoding data via topological modifications of the DNA sugar-phosphate backbone. The DNA Punchcards…

Emerging Technologies · Computer Science 2025-05-07 Jin Sima , Chao Pan , S. Kasra Tabatabaei , Alvaro G. Hernandez , Charles M. Schroeder , Olgica Milenkovic

Recently, a RGB image encryption algorithm based on DNA encoding and chaos map has been proposed. It was reported that the encryption algorithm can be broken with four pairs of chosen plain-images and the corresponding cipher-images. This…

Cryptography and Security · Computer Science 2014-03-05 Yuansheng Liu

We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivations including DNA computing and DNA self-assembly. Previous…

Data Structures and Algorithms · Computer Science 2007-05-23 Ming-Yang Kao , Manan Sanghi , Robert Schweller

JPEG is arguably the most popular image coding format, achieving high compression ratios via lossy quantization that may create visual artifacts degradation. Numerous attempts to remove these artifacts were conceived over the years, and…

Image and Video Processing · Electrical Eng. & Systems 2023-09-01 Sean Man , Guy Ohayon , Theo Adrai , Michael Elad

Applying encryption technology to image retrieval can ensure the security and privacy of personal images. The related researches in this field have focused on the organic combination of encryption algorithm and artificial feature…

Multimedia · Computer Science 2022-08-26 Zhixun Lu , Qihua Feng , Peiya Li

Motivation: Next Generation Sequencing technologies revolutionized many fields in biology by enabling the fast and cheap sequencing of large amounts of genomic data. The ever increasing sequencing capacities enabled by current sequencing…

Genomics · Quantitative Biology 2012-07-24 Himanshu Asnani , Dinesh Bharadia , Mainak Chowdhury , Idoia Ochoa , Itai Sharon , Tsachy Weissman

DNA-based storage has emerged as a promising approach to the global data crisis, offering molecular-scale density and millennial-scale stability at low maintenance cost. Over the past decade, substantial progress has been made in storing…

Computer Vision and Pattern Recognition · Computer Science 2026-04-16 Cihan Ruan , Lebin Zhou , Bingqing Zhao , Rongduo Han , Qiming Yuan , Chenchen Zhu , Linyi Han , Liang Yang , Wei Wang , Wei Jiang , Nam Ling

DNA codes have many applications, such as in data storage, DNA computing, etc. Good DNA codes have large sizes and satisfy some certain constraints. In this paper, we present a new construction method for reversible DNA codes. We show that…

Information Theory · Computer Science 2024-03-19 Xueyan Chen , Whan-Hyuk Choi , Hongwei Liu

Recent genomic foundation models largely adopt large language model architectures that treat DNA as a one-dimensional token sequence. However, exhaustive sequential reading is structurally misaligned with sparse and discontinuous genomic…

Computer Vision and Pattern Recognition · Computer Science 2026-02-03 Hongxin Xiang , Pengsen Ma , Yunkang Cao , Di Yu , Haowen Chen , Xinyu Yang , Xiangxiang Zeng

DNA data storage is rapidly emerging as a promising solution for long-term data archiving, largely due to its exceptional durability. However, the synthesis of DNA strands remains a significant bottleneck in terms of cost and speed. To…

Other Computer Science · Computer Science 2025-07-11 Parv Agarwal , Nimesh Pinnamaneni , Thomas Heinis

The ISO/IEC JPEG 2000 image coding standard is a family of source coding algorithms targeting high-resolution image communications. JPEG 2000 features highly scalable embedded coding features that allow one to interactively zoom out to…

Information Theory · Computer Science 2014-10-24 Christopher M. Brislawn , Jonathan L. Woodring , Susan M. Mniszewski , David E. DeMarle , James P. Ahrens

JPEG images can be further compressed to enhance the storage and transmission of large-scale image datasets. Existing learned lossless compressors for RGB images cannot be well transferred to JPEG images due to the distinguishing…

Image and Video Processing · Electrical Eng. & Systems 2023-03-09 Jixiang Luo , Shaohui Li , Wenrui Dai , Chenglin Li , Junni Zou , Hongkai Xiong

The coverage depth problem in DNA data storage is about minimizing the expected number of reads until all data is recovered. When they exist, MDS codes offer the best performance in this context. This paper focuses on the scenario where the…

Information Theory · Computer Science 2025-07-29 Matteo Bertuzzo , Alberto Ravagnani , Eitan Yaakobi

DNA sequencing technology has advanced to a point where storage is becoming the central bottleneck in the acquisition and mining of more data. Large amounts of data are vital for genomics research, and generic compression tools, while…

Information Theory · Computer Science 2016-11-15 Bobbie Chern , Idoia Ochoa , Alexandros Manolakos , Albert No , Kartik Venkat , Tsachy Weissman
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