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Related papers: Bacterial activity hinders particle sedimentation

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Peritrichous bacteria such as Escherichia coli swim in viscous fluids by forming a helical bundle of flagellar filaments. The filaments are spatially distributed around the cell body to which they are connected via a flexible hook. To…

Biological Physics · Physics 2019-06-19 Kenta Ishimoto , Eric Lauga

The sedimentation of a spherical particle in an elastoviscoplastic fluid in proximity of a flat wall is investigated by direct numerical simulations. The governing equations under inertialess conditions are solved by the finite element…

Fluid Dynamics · Physics 2023-02-10 Alie Abbasi Yazdi , Gaetano D'Avino

In this paper, the effects of interfacial tension between the sediment solid particle and liquid on the settlement of sediment flocs are investigated. After a discussion of mechanical and physical chemistry, we give a settling velocity…

Fluid Dynamics · Physics 2007-05-23 Zhao Jianglin

Interactions between swimming bacteria have led to remarkable experimentally observable macroscopic properties such as the reduction of the effective viscosity, enhanced mixing, and diffusion. In this work, we study an individual based…

Analysis of PDEs · Mathematics 2015-04-14 Mykhailo Potomkin , Shawn Ryan , Leonid Berlyand

The spreading of bacterial colonies at solid-air interfaces is determined by the physico-chemical properties of the involved interfaces. The production of surfactant molecules by bacteria is a widespread strategy that allows the colony to…

Biological Physics · Physics 2018-07-24 Sarah Trinschek , Karin John , Uwe Thiele

Bacterial contamination of biological conducts, catheters or water resources is a major threat to public health and can be amplified by the ability of bacteria to swim upstream. The mechanisms of this rheotaxis, the reorientation with…

Soft Condensed Matter · Physics 2019-08-12 Arnold Mathijssen , Nuris Figueroa-Morales , Gaspard Junot , Eric Clement , Anke Lindner , Andreas Zöttl

We revisit a recently proposed agent-based model of active biological motion and compare its predictions with own experimental findings for the speed distribution of bacterial cells, \emph{Salmonella typhimurium}. Agents move according to a…

Cell Behavior · Quantitative Biology 2011-09-19 Victor Garcia , Mirko Birbaumer , Frank Schweitzer

Diffusion of colloidal particles in a complex environment such as polymer networks or biological cells is a topic of high complexity with significant biological and medical relevance. In such situations, the interaction between the…

Statistical Mechanics · Physics 2015-11-10 Andreas M. Menzel

Using a fluid-particle dynamics approach, we numerically study the effects of hydrodynamic interactions on the collective dynamics of active suspensions within a simple model for bacterial motility: each microorganism is modeled as a…

Soft Condensed Matter · Physics 2015-06-22 Akira Furukawa , Davide Marenduzzo , Michael E Cates

Bacteria commonly inhabit porous environments such as host tissues, soil, and marine sediments, where complex geometries constrain and redirect their motion. Although bacterial motility has been studied in porous media, the roles of cell…

Soft Condensed Matter · Physics 2025-12-22 David Gao , Zeyuan Wang , Mihika Jain , Arnold J. T. M. Mathijssen , Ran Tao

Adding a non-adsorbing polymer to passive colloids induces an attraction between the particles via the `depletion' mechanism. High enough polymer concentrations lead to phase separation. We combine experiments, theory and simulations to…

Soft Condensed Matter · Physics 2016-07-13 J. Schwarz-Linek , C. Valeriani , A. Cacciuto , M. E. Cates , D. Marenduzzo , A. N. Morozov , W. C. K. Poon

Motile bacteria are known to accumulate at surfaces, eventually leading to changes in bacterial motility and bio-film formation. We use a novel two-colour, three-dimensional Lagrangian tracking technique, to follow simultaneously the body…

Active matter comprised of self-propelled interacting units holds a major promise for extraction of useful work from its seemingly chaotic out-of-equilibrium dynamics. Streamlining active matter to produce work is especially important at…

Soft Condensed Matter · Physics 2021-03-17 Mojtaba Rajabi , Hend Baza , Taras Turiv , Oleg D. Lavrentovich

Peritrichous bacteria synchronize and bundle their flagella to actively swim while disruption of the bundle leads to tumbling. It is still not known whether the number of flagella represents an evolutionary adaptation towards optimizing…

Biological Physics · Physics 2020-04-21 Javad Najafi , M. Reza Shaebani , Thomas John , Florian Altegoer , Gert Bange , Christian Wagner

The particle diffusion in a fluid is a classical topic that dates back to more than one century ago. However, a full solution to this issue still lacks. In this work the velocity autocorrelation function and the diffusion constant are…

Fluid Dynamics · Physics 2016-08-03 Hanqing Zhao , Hong Zhao

We report a novel form of convection in suspensions of the bioluminiscent marine bacterium $Photobacterium~phosphoreum$. Suspensions of these bacteria placed in a chamber open to the air create persistent luminiscent plumes most easily…

Soft Condensed Matter · Physics 2019-01-02 Jocelyn Dunstan , Kyoung J. Lee , Simon F. Park , Yongyun Hwang , Raymond E. Goldstein

We present the results of molecular dynamics simulations of SPC/E water confined in a realistic model of a silica pore. The single-particle dynamics have been studied at ambient temperature for different hydration levels. The confinement…

Statistical Mechanics · Physics 2009-10-31 P. Gallo , M. Rovere , M. A. Ricci , C. Hartnig , E. Spohr

Hydrodynamics and confinement dominate bacterial mobility near solid or air-water boundaries, causing flagellated bacteria to move in circular trajectories. This phenomenon results from the counter-rotation between the bacterial body and…

Biological Physics · Physics 2018-10-09 George Araujo , Weijie Chen , Sridhar Mani , Jay X. Tang

A flagellated bacterium navigates fluid environments by rotating its helical flagellar bundle. The wobbling of the bacterial body significantly influences its swimming behavior. To quantify the three underlying motions--precession,…

Soft Condensed Matter · Physics 2026-05-29 Jinglei Hu , Chen Gui , Mingxin Mao , Pu Feng , Yurui Liu , Xiangjun Gong , Gerhard Gompper

Unraveling bacterial strategies for spatial exploration is crucial for understanding the complexity in the organization of life. Bacterial motility determines the spatio-temporal structure of microbial communities, controls infection…