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Accurately modeling bending energy in morphogenetic simulations is crucial, especially when dealing with anisotropic meshes where remeshing is infeasible due to the biologically meaningful entities of vertex positions (e.g., cells). This…

Biological Physics · Physics 2025-03-04 Tomohiro Mimura , Yasuhiro Inoue

A computationally efficient method is presented for approximate optimization of cutting pattern of frame-supported and pneumatic membrane structures. The plane cutting sheet is generated by minimizing the error from the shape obtained by…

Optimization and Control · Mathematics 2017-12-14 Makoto Ohsaki , Jun Fujiwara , Fumiyoshi Takeda

Nanoparticle surface structural dynamics is believed to play a significant role in regulating functionalities such as diffusion, reactivity, and catalysis but the atomic-level processes are not well understood. Atomic resolution…

Metallic nanoparticles, liquefied by fast laser irradiation, go through a rapid change of shape attempting to minimize their surface energy. The resulting nanodrops may be ejected from the substrate when the mechanisms leading to dewetting…

Fluid Dynamics · Physics 2013-07-18 S. Afkhami , L. Kondic

Freestanding oxide films offer significant potential for integrating exotic quantum functionalities with semiconductor technologies. However, their performance is critically limited by surface roughness and interfacial imperfection caused…

Materials Science · Physics 2025-11-04 Huaicheng Yuan , Yu-Chen Liu , Li-Shu Wang , Zehao Dong , Jan-Chi Yang , Zhen Chen

The debiting process of the remarkable properties materials can be managed through unconventional technologies as the complex electrical erosion. We present the modeling of the previous experimental results to obtain a mathematical…

Other Computer Science · Computer Science 2009-06-05 Tiberiu Marius Karnyanszky , Mihai Titu

In this work, we propose a framework that constructs reduced order models for nonlinear structural mechanics in a nonintrusive fashion, and can handle large scale simulations. We identify three steps that are carried out separately in time,…

Numerical Analysis · Mathematics 2023-02-02 Fabien Casenave , Nissrine Akkari , Felipe Bordeu , Christian Rey , David Ryckelynck

A set of programs for the numerical simulation of the diffusion decomposition processes was developed by using simulation methods, kinetic and particle method. The complex has been validated on the model system Ni-Al by the growth of -phase…

Materials Science · Physics 2022-08-18 A. V. Sagalovych , V. V. Sagalovich , V. N. Chabanovsky

An efficient method for the calculation of ferromagnetic resonant modes of magnetic structures is presented. Finite-element discretization allows flexible geometries and location dependent material parameters. The resonant modes can be used…

Computational Physics · Physics 2018-12-26 Florian Bruckner , Massimiliano d'Aquino , Claudio Serpico , Claas Abert , Christoph Vogler , Dieter Suess

We present an adaptive reduced-order model for the efficient time-resolved simulation of fluid-structure interaction problems with complex and non-linear deformations. The model is based on repeated linearizations of the structural balance…

Fluid Dynamics · Physics 2020-04-13 Ali Thari , Vito Pasquariello , Niels Aage , Stefan Hickel

Analytical electron microscopy and spectroscopy of biological specimens, polymers, and other beam sensitive materials has been a challenging area due to irradiation damage. There is a pressing need to develop novel imaging and spectroscopic…

Machine Learning · Computer Science 2017-07-14 Yan Zhang , G. M. Dilshan Godaliyadda , Nicola Ferrier , Emine B. Gulsoy , Charles A. Bouman , Charudatta Phatak

This paper presents a new resolution strategy for multi-scale streamer discharge simulations based on a second order time adaptive integration and space adaptive multiresolution. A classical fluid model is used to describe plasma…

Numerical Analysis · Mathematics 2012-04-10 Max Duarte , Zdenek Bonaventura , Marc Massot , Anne Bourdon , Stéphane Descombes , Thierry Dumont

We present a data-driven reduced-order modeling of the space-charge dynamics for electromagnetic particle-in-cell (EMPIC) plasma simulations based on dynamic mode decomposition (DMD). The dynamics of the charged particles in kinetic plasma…

Plasma Physics · Physics 2025-07-29 Indranil Nayak , Fernando L. Teixeira , Dong-Yeop Na , Mrinal Kumar , Yuri A. Omelchenko

In this work, we derive particle schemes, based on micro-macro decomposition, for linear kinetic equations in the diffusion limit. Due to the particle approximation of the micro part, a splitting between the transport and the collision part…

Numerical Analysis · Mathematics 2017-01-19 Anaïs Crestetto , Nicolas Crouseilles , Mohammed Lemou

We report a new technique for fabricating metallic electrodes on insulating substrates with separations on the 1 nm scale. The fabrication technique, which combines lithographic and electrochemical methods, provides atomic resolution…

Materials Science · Physics 2009-10-31 A. F. Morpurgo , D. B. Robinson , C. M. Marcus

This work aims to describe a mathematical model and a numerical method to simulate a thin anisotropic composite membrane moving and deforming in 3D space under a dynamic load of an arbitrary time and space profile. The model and the method…

Numerical Analysis · Mathematics 2020-07-24 Vitalii Aksenov , Alexey Vasyukov , Igor Petrov

An alternative methodology to evaluate two-electron-repulsion integrals based on numerical approximation is proposed. Computational chemistry has branched into two major fields with methodologies based on quantum mechanics and classical…

Chemical Physics · Physics 2016-09-22 Pedro E. M. Lopes

Coarse-grained modeling in molecular simulations serves not only to extend accessible time and length scales beyond atomistic limits, but also to reduce high-dimensional chemical data to low-dimensional representations that expose the…

Chemical Physics · Physics 2026-05-19 Michael N. Sakano , Alejandro Strachan

A parameterization strategy for molecular models on the basis of force fields is proposed, which allows a rapid development of models for small molecules by using results from quantum mechanical (QM) ab initio calculations and thermodynamic…

Chemical Physics · Physics 2009-04-22 Bernhard Eckl , Jadran Vrabec , Hans Hasse

Real-space refinement of atomic models in macromolecular crystallography or in cryo electron microscopy fits a model to a map obtained experimentally. This requires generating model maps of a limited resolution which moreover may vary from…

Computational Engineering, Finance, and Science · Computer Science 2022-06-22 Ludmila Urzhumtseva , Vladimir Y. Lunin , Alexandre Urzhumtsev
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