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The paper is concerned with Forster Resonance Energy Transfer (FRET) considered as a mechanism for communication between nanodevices. Two solved issues are reported in the paper, namely: signal generation and signal storage in FRET-based…

Medical Physics · Physics 2019-12-05 Jakub Kmiecik , Krzysztof Wojcik , Pawel Kulakowski , Andrzej Jajszczyk

Recent advances in Fluorescence Resonance Energy Transfer (FRET) provides a way to measure and understand different biological systems and molecular interactions in nanometer order. In this report the introduction and principle of the FRET…

General Physics · Physics 2009-08-14 Syed Arshad Hussain

A practical, biologically motivated case of protein complexes (immunoglobulin G and FcRII receptors) moving on the surface of mastcells, that are common parts of an immunological system, is investigated. Proteins are considered as…

Molecular Networks · Quantitative Biology 2018-02-16 Jakub Kmiecik , Pawel Kulakowski , Krzysztof Wojcik , Andrzej Jajszczyk

The applications of Fluorescence resonance energy transfer (FRET) have expanded tremendously in the last 25 years, and the technique has become a staple technique in many biological and biophysical fields. FRET can be used as spectroscopic…

Transduction of mechanical stimuli into biochemical signals is a fundamental subject for cell physics. In the experiments of FRET signal in cells a wave propagation in nanoscope was observed. We here develop a diffusion wave concept and try…

Biological Physics · Physics 2012-10-31 Tian You Fan , Lei Fan

Nanocommunications, understood as communications between nanoscale devices, is commonly regarded as a technology essential for cooperation of large groups of nanomachines and thus crucial for development of the whole area of nanotechnology.…

Biological Physics · Physics 2018-02-15 Pawel Kulakowski , Kamil Solarczyk , Krzysztof Wojcik

Nano-communication has gained significant attention in the last few years, as a means to establish information transfer between future nano-machines. Comparing with other communication techniques for nano-scale (calcium ions signaling,…

Biological Physics · Physics 2021-03-16 Krzysztof Wojcik , Kamil Solarczyk , Pawel Kulakowski

Chlorophylls and carotenoids, key components of photosynthetic systems, are proposed for molecular communications at the nanoscale with the mechanism of resonance energy transfer. Both types of pigments are introduced focusing on their…

Biological Physics · Physics 2021-03-26 Aleksandra Orzechowska , Joanna Fiedor , Pawel Kulakowski

A theory for the fluorescence resonance energy transfer (FRET) between a pair of semiconducting nanocrystal quantum dots is developed. Two types of donor-acceptor couplings for the FRET rate are described: dipole-dipole (d-d) and the…

Materials Science · Physics 2009-11-13 Roi Baer , Eran Rabani

The phenomenon of Forster Resonance Energy Transfer, commonly used to measure the distances between fluorophore molecules and to study interactions between fluorescent-tagged proteins in life sciences, can also be applied in…

Biological Physics · Physics 2018-02-15 Kamil Solarczyk , Krzysztof Wojcik , Pawel Kulakowski

Diffusion-based and neural communication are two interesting domains in molecular communication. Both of them have distinct advantages and are exploited separately in many works. However, in some cases, neural and diffusion-based ways have…

Emerging Technologies · Computer Science 2015-07-07 Peng He , Yuming Mao , Qiang Liu , Kun Yang

Applications of Fluorescence Resonance Energy Transfer (FRET) in biology have expanded tremendously in the last 25 years. This technique has become a staple technique in many biological and biophysical fields. FRET based chemical sensors…

Biological Physics · Physics 2020-05-05 Ripa Paul , Sudip Suklabaidya , Syed Arshad Hussain

Nanophotonics achieves accurate control over the luminescence properties of a single quantum emitter by tailoring the light-matter interaction at the nanoscale and modifying the local density of optical states (LDOS). This paradigm could…

Single molecule FRET (fluorescence resonance energy transfer) is a powerful technique for detecting real-time conformational changes and molecular interactions during biological reactions. In this review, we examine different techniques of…

Biomolecules · Quantitative Biology 2007-05-23 Ivan Rasnik , Sean A. McKinney , Taekjip Ha

Resonant energy transfers, i.e. the non-radiative redistribution of an electronic excitation between two particles coupled by the dipole-dipole interaction, lie at the heart of a variety of chemical and biological phenomena, most notably…

Recent genome and transcriptome sequencing projects have unveiled a plethora of highly structured RNA molecules as central mediators of cellular function. Single molecule Forster Resonance Energy Transfer (smFRET) is a powerful tool for…

Motivated by recent experiments on photon statistics from individual dye pairs planted on biomolecules and coupled by fluorescence resonance energy transfer (FRET), we show here that the FRET dynamics can be modelled by Gaussian random…

Quantum Physics · Physics 2016-09-28 G. O. Ariunbold , G. S. Agarwal , Z. Wang , H. Walther , M. O. Scully

We present a palette of brightly fluorescent genetically encoded voltage indicators (GEVIs) with excitation and emission peaks spanning the visible spectrum, sensitivities from 6 - 10% Delta F/F per 100 mV, and half-maximal response times…

In the view of the applications of Forster resonant energy transfer (FRET) in biological systems which especially require FRET in the inrared region we investigate the great advantage of graphene plasmonics in such studies. Focusing on the…

Mesoscale and Nanoscale Physics · Physics 2015-06-17 Svend-Age Biehs , Girish S. Agarwal

Biological systems transduce signals from their surroundings in numerous ways. This paper introduces a communication system using the light-gated ion channel Channelrhodopsin-2 (ChR2), which causes an ion current to flow in response to…

Information Theory · Computer Science 2024-11-11 Taha Sajjad , Andrew W. Eckford
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