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We study the dynamics of gene activities in relatively small size biological networks (up to a few tens of nodes), e.g. the activities of cell-cycle proteins during the mitotic cell-cycle progression. Using the framework of deterministic…

Molecular Networks · Quantitative Biology 2009-11-13 Gautier Stoll , Jacques Rougemont , Felix Naef

Among the versatile forms of dynamical patterns of activity exhibited by the brain, oscillations are one of the most salient and extensively studied, yet are still far from being well understood. In this paper, we provide various structural…

Systems and Control · Electrical Eng. & Systems 2021-08-12 Erfan Nozari , Robert Planas , Jorge Cortes

This paper studies structural controllability for a networked dynamic system (NDS), in which each subsystem may have different dynamics, and unknown parameters may exist both in subsystem dynamics and in subsystem interconnections. In…

Optimization and Control · Mathematics 2019-03-07 Yuan Zhang , Tong Zhou

Despite the knowledge that social, economical, and ecological networks are often of a small-world nature with inter-nodal distance growing even slower than logarithmically with system size, we often assume theoretical systems to be outside…

Disordered Systems and Neural Networks · Physics 2026-05-21 Nirbhay Patil , Ada Altieri , Fabian Aguirre-Lopez

We study the evolution of a random weighted network with complex nonlinear dynamics at each node, whose activity may cease as a result of interactions with other nodes. Starting from a knowledge of the micro-level behaviour at each node, we…

Statistical Mechanics · Physics 2007-05-23 Sitabhra Sinha , Sudeshna Sinha

The recent discovery of universal principles underlying many complex networks occurring across a wide range of length scales in the biological world has spurred physicists in trying to understand such features using techniques from…

Biological Physics · Physics 2015-05-13 Sitabhra Sinha

The analysis of the dynamics of a large class of excitable systems on locally tree-like networks leads to the conclusion that at $\lambda=1$ a continuous phase transition takes place, where $\lambda$ is the largest eigenvalue of the…

Statistical Mechanics · Physics 2021-12-09 Milad Rahimi-Majd , Juan G. Restrepo , Morteza Nattagh-Najafi

It has been proposed that adaptation in complex systems is optimized at the critical boundary between ordered and disordered dynamical regimes. Here, we review models of evolving dynamical networks that lead to self-organization of network…

Adaptation and Self-Organizing Systems · Physics 2008-11-07 Thimo Rohlf , Stefan Bornholdt

Networks are universally considered as complex structures of interactions of large multi-component systems. In order to determine the role that each node has inside a complex network, several centrality measures have been developed. Such…

Physics and Society · Physics 2019-08-20 Malbor Asllani , Bruno Requiao da Cunha , Ernesto Estrada , James P. Gleeson

We analyse a collection of empirical networks in a wide spectrum of disciplines and show that strong non-normality is ubiquitous in network science. Dynamical processes evolving on non-normal networks exhibit a peculiar behaviour, as…

Adaptation and Self-Organizing Systems · Physics 2018-11-09 Malbor Asllani , Renaud Lambiotte , Timoteo Carletti

Models of complex networks often incorporate node-intrinsic properties abstracted as hidden variables. The probability of connections in the network is then a function of these variables. Real-world networks evolve over time, and many…

Physics and Society · Physics 2021-05-19 Harrison Hartle , Fragkiskos Papadopoulos , Dmitri Krioukov

We evolve network topology of an asymmetrically connected threshold network by a simple local rewiring rule: quiet nodes grow links, active nodes lose links. This leads to convergence of the average connectivity of the network towards the…

Disordered Systems and Neural Networks · Physics 2009-10-31 Stefan Bornholdt , Thimo Rohlf

Fast and accurate structural dynamics analysis is important for structural design and damage assessment. Structural dynamics analysis leveraging machine learning techniques has become a popular research focus in recent years. Although the…

Geophysics · Physics 2020-12-29 Yuan Feng , Hexiang Wang , Han Yang , Fangbo Wang

Network embedding aims to embed nodes into a low-dimensional space, while capturing the network structures and properties. Although quite a few promising network embedding methods have been proposed, most of them focus on static networks.…

Machine Learning · Computer Science 2019-09-11 Yuanfu Lu , Xiao Wang , Chuan Shi , Philip S. Yu , Yanfang Ye

We study the coevolutionary dynamics of network topology and social complex contagion using a threshold cascade model. Our coevolving threshold model incorporates two mechanisms: the threshold mechanism for the spreading of a minority state…

Physics and Society · Physics 2023-06-16 Byungjoon Min , Maxi San Miguel

The structure of a network has a major effect on dynamical processes on that network. Many studies of the interplay between network structure and dynamics have focused on models of phenomena such as disease spread, opinion formation and…

Dynamical Systems · Mathematics 2025-10-21 Lucas Böttcher , Mason A. Porter

Threshold networks are used as models for neural or gene regulatory networks. They show a rich dynamical behaviour with a transition between a frozen and a chaotic phase. We investigate the phase diagram of randomly connected threshold…

Statistical Mechanics · Physics 2009-11-13 Agnes Szejka , Tamara Mihaljev , Barbara Drossel

Modeling human dynamics responsible for the formation and evolution of the so-called social networks - structures comprised of individuals or organizations and indicating connectivities existing in a community - is a topic recently…

Computers and Society · Computer Science 2007-05-23 Victor V. Kryssanov , Frank J. Rinaldo , Evgeny L. Kuleshov , Hitoshi Ogawa

Dynamic networks models describe a growing number of important scientific processes, from cell biology and epidemiology to sociology and finance. There are many aspects of dynamical networks that require statistical considerations. In this…

Methodology · Statistics 2012-05-15 E. C. Wit , A. Abbruzzo

A certain degree of inhibition is a common trait of dynamical networks in nature, ranging from neuronal and biochemical networks, to social and technological networks. We study here the role of inhibition in a representative dynamical…

Adaptation and Self-Organizing Systems · Physics 2017-12-27 Joao Pinheiro Neto , Marcus A. M. de Aguiar , José A. Brum , Stefan Bornholdt