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We develop a simple optimization procedure for assigning binary values to the amino acids. The binary values are determined by a maximization of the degree of pattern conservation in groups of closely related protein sequences. The…

chem-ph · Physics 2008-02-03 Anders Irbäck , Frank Potthast

The compact genetic algorithm is an Estimation of Distribution Algorithm for binary optimisation problems. Unlike the standard Genetic Algorithm, no cross-over or mutation is involved. Instead, the compact Genetic Algorithm uses a virtual…

Neural and Evolutionary Computing · Computer Science 2017-08-08 Simon M. Lucas , Jialin Liu , Diego Pérez-Liébana

Genetic algorithms have played an important role in engineering optimization. Traditional GAs treat each gene separately. However, biophysical studies of gene regulatory networks revealed direct associations between different genes. It…

Neural and Evolutionary Computing · Computer Science 2024-05-01 Zhaoning Shi , Meng Xiang , Zhaoyang Hai , Xiabi Liu , Yan Pei

The method and the advantages of an evolutionary computing based approach using a steady state genetic algorithm (GA) for the parameterization of interatomic potentials for metal oxides within the shell model framework are developed and…

Materials Science · Physics 2013-06-06 Jose Solomon , Peter Chung , Deepak Srivastava , Eric Darve

Optimizing a neural network's performance is a tedious and time taking process, this iterative process does not have any defined solution which can work for all the problems. Optimization can be roughly categorized into - Architecture and…

Machine Learning · Computer Science 2019-12-16 Siddhartha Dhar Choudhury , Shashank Pandey , Kunal Mehrotra

We present a genetic algorithm which is distributed in two novel ways: along genotype and temporal axes. Our algorithm first distributes, for every member of the population, a subset of the genotype to each network node, rather than a…

Neural and Evolutionary Computing · Computer Science 2007-05-23 Minkyu Kim , Varun Aggarwal , Una-May O'Reilly , Muriel Medard

Microarray techniques are widely used in Gene expression analysis. These techniques are based on discovering submatrices of genes that share similar expression patterns across a set of experimental conditions with coherence constraint.…

Quantitative Methods · Quantitative Biology 2020-01-27 Bilal Taher , Muhammad. H Fares , Saeed Jalili

Data quality on categorical attribute is a difficult problem that has not received as much attention as numerical counterpart. Our basic idea is to employ association rule for the purpose of data quality measurement. Strong rule generation…

Databases · Computer Science 2012-02-16 J. Malar Vizhi , T. Bhuvaneswari

Genetic algorithms are heuristic optimization techniques inspired by Darwinian evolution, which are characterized by successfully finding robust solutions for optimization problems. Here, we propose a subroutine-based quantum genetic…

Quantum Physics · Physics 2024-06-07 Rubén Ibarrondo , Giancarlo Gatti , Mikel Sanz

Current layouts for alphabetic input on mobile phone keypads are very inefficient. We propose a genetic algorithm (GA) to find a suitable keypad layout for each user, based on their personal text history. It incorporates codes for frequent…

Human-Computer Interaction · Computer Science 2014-12-04 Joonseok Lee , R. I. , McKay

This study proposes a data condensation method for multivariate kernel density estimation by genetic algorithm. First, our proposed algorithm generates multiple subsamples of a given size with replacement from the original sample. The…

Methodology · Statistics 2022-03-04 Kiheiji Nishida

The paper presents a method for failure free genetic algorithm optimization of a system controller. Genetic algorithms present a powerful tool that facilitates producing near-optimal system controllers. Applied to such methods of…

Neural and Evolutionary Computing · Computer Science 2007-05-23 E. S. Sazonov , D. Del Gobbo , P. Klinkhachorn , R. L. Klein

Splitting a literal genomic sequence into 4 binary files is enough to ensure confidentiality and integrity during storage and transfer of information. The binary files are resources for RSA or one-time-pad (OTP) cryptography protocols. It…

Cryptography and Security · Computer Science 2020-03-13 Guy Dodin

Convolutional Neural Networks (CNN) have gained great success in many artificial intelligence tasks. However, finding a good set of hyperparameters for a CNN remains a challenging task. It usually takes an expert with deep knowledge, and…

Neural and Evolutionary Computing · Computer Science 2020-06-25 Xueli Xiao , Ming Yan , Sunitha Basodi , Chunyan Ji , Yi Pan

In information retrieval research; Genetic Algorithms (GA) can be used to find global solutions in many difficult problems. This study used different similarity measures (Dice, Inner Product) in the VSM, for each similarity measure we…

Information Retrieval · Computer Science 2013-12-03 Eman Al Mashagba , Feras Al Mashagba , Mohammad Othman Nassar

Cloud computing is one of the most used distributed systems for data processing and data storage. Due to the continuous increase in the size of the data processed by cloud computing, scheduling multiple tasks to maintain efficiency while…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-08-24 Mahdi Manavi , Yunpeng Zhang , Guoning Chen

The Use of genetic algorithms in the Information retrieval (IR) area, especially in optimizing a user query in Arabic data collections is presented in this paper. Very little research has been carried out on Arabic text collections. Boolean…

Information Retrieval · Computer Science 2013-12-03 Mohammad Othman Nassar , Feras Al Mashagba , Eman Al Mashagba

Genetic algorithms are modeled after the biological evolutionary processes that use natural selection to select the best species to survive. They are heuristics based and low cost to compute. Genetic algorithms use selection, crossover, and…

Neural and Evolutionary Computing · Computer Science 2020-05-28 Mee Seong Im , Venkat R. Dasari

With meteoric developments in communication systems and data storage technologies, the need for secure data transmission is more crucial than ever. The level of security provided by any cryptosystem relies on the sensitivity of the private…

Cryptography and Security · Computer Science 2020-11-03 Unnikrishnan Menon , Anirudh Rajiv Menon , Atharva Hudlikar

A multi-objective genetic algorithm is developed for optimizing nonlinearities in diffraction limited storage rings. This algorithm determines sextupole and octupole strengths for chromaticity correction that deliver optimized dynamic…

Accelerator Physics · Physics 2016-04-27 M. P. Ehrlichman