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Over the course of the COVID-19 pandemic, Generalised Additive Models (GAMs) have been successfully employed on numerous occasions to obtain vital data-driven insights. In this paper we further substantiate the success story of GAMs,…

Raw data on the cumulative number of deaths at a country level generally indicate a spatially variable distribution of the incidence of COVID-19 disease. An important issue is to determine whether this spatial pattern is a consequence of…

Populations and Evolution · Quantitative Biology 2020-07-21 Lionel Roques , Olivier Bonnefon , Virgile Baudrot , Samuel Soubeyrand , Henri Berestycki

During an epidemic outbreak, decision makers crucially need accurate and robust tools to monitor the pathogen propagation. The effective reproduction number, defined as the expected number of secondary infections stemming from one…

Signal Processing · Electrical Eng. & Systems 2026-01-14 Etienne Lasalle , Barbara Pascal

Environmental and climate processes are often distributed over large space-time domains. Their complexity and the amount of available data make modelling and analysis a challenging task. Statistical modelling of environment and climate data…

Methodology · Statistics 2019-10-02 Behnaz Pirzamanbein

CircSpaceTime is the only R package currently available that implements Bayesian models for spatial and spatio-temporal interpolation of circular data. Such data are often found in applications where, among the many, wind directions, animal…

Applications · Statistics 2020-01-03 Giovanna Jona Lasinio , Mario Santoro , Gianluca Mastrantonio

As the COVID-19 pandemic evolves, reliable prediction plays an important role for policy making. The classical infectious disease model SEIR (susceptible-exposed-infectious-recovered) is a compact yet simplistic temporal model. The…

Machine Learning · Computer Science 2020-10-20 Yunling Zheng , Zhijian Li , Jack Xin , Guofa Zhou

Gaussian processes (GPs) are well-known tools for modeling dependent data with applications in spatial statistics, time series analysis, or econometrics. In this article, we present the R package varycoef that implements estimation,…

Computation · Statistics 2021-06-07 Jakob A. Dambon , Fabio Sigrist , Reinhard Furrer

A multiple objective space-time forecasting approach is presented involving cyclical curve log-regression, and multivariate time series spatial residual correlation analysis. Specifically, the mean quadratic loss function is minimized in…

Machine Learning · Statistics 2021-03-30 A. Torres-Signes , M. P. Frías , M. D. Ruiz-Medina

Traditional regression models assume stationary relationships between predictors and responses, failing to capture the spatial heterogeneity present in many environmental, epidemiological, and ecological processes. To address this…

Methodology · Statistics 2025-05-27 Justice Akuoko-Frimpong , Edward Shao , Jonathan Ta

Temporal data, notably time series and spatio-temporal data, are prevalent in real-world applications. They capture dynamic system measurements and are produced in vast quantities by both physical and virtual sensors. Analyzing these data…

The INLAMSM package for the R programming language provides a collection of multivariate spatial models for lattice data that can be used with package INLA for Bayesian inference. The multivariate spatial models include different structures…

In the political decision process and control of COVID-19 (and other epidemic diseases), mathematical models play an important role. It is crucial to understand and quantify the uncertainty in models and their predictions in order to take…

Applications · Statistics 2021-09-17 Bjørn Jensen , Allan P. Engsig-Karup , Kim Knudsen

Time-to-event analysis is an important statistical tool for allocating clinical resources such as ICU beds. However, classical techniques like the Cox model cannot directly incorporate images due to their high dimensionality. We propose a…

Image and Video Processing · Electrical Eng. & Systems 2021-08-24 Michelle Shu , Richard Strong Bowen , Charles Herrmann , Gengmo Qi , Michele Santacatterina , Ramin Zabih

At the end of April 20, 2020, there were only a few new COVID-19 cases remaining in China, whereas the rest of the world had shown increases in the number of new cases. It is of extreme importance to develop an efficient statistical model…

Methodology · Statistics 2021-03-01 Xiaoping Shi , Meiqian Chen , Yucheng Dong

We propose a high dimensional Bayesian inference framework for learning heterogeneous dynamics of a COVID-19 model, with a specific application to the dynamics and severity of COVID-19 inside and outside long-term care (LTC) facilities. We…

Methodology · Statistics 2021-08-04 Peng Chen , Keyi Wu , Omar Ghattas

We demonstrate the ability of statistical data assimilation to identify the measurements required for accurate state and parameter estimation in an epidemiological model for the novel coronavirus disease COVID-19. Our context is an effort…

Populations and Evolution · Quantitative Biology 2020-08-04 Eve Armstrong , Manuela Runge , Jaline Gerardin

Objective: To develop machine learning models that can predict the number of COVID-19 cases per day given the last 14 days of environmental and mobility data. Approach: COVID-19 data from four counties around Toronto, Ontario, were used.…

Machine Learning · Computer Science 2023-03-21 Daniel L. Silver , Rinda Digamarthi

Exploring the spatio-temporal variations of COVID-19 transmission and its potential determinants could provide a deeper understanding of the dynamics of disease spread. This study aims to investigate the spatio-temporal spread of COVID-19…

Applications · Statistics 2023-08-21 Xueqing Yin , John M. Aiken , Richard Harris , Jonathan L. Bamber

This study presents a comprehensive assessment of the Italian risk model used during the COVID-19 pandemic to guide regional mobility restrictions through a colour-coded classification system. The research focuses on evaluating the…

Applications · Statistics 2025-07-04 Giuseppe Drago , Giulia Marcon , Alberto Lombardo , Giuseppe Aiello

The visual modeling method enables flexible interactions with rich graphical depictions of data and supports the exploration of the complexities of epidemiological analysis. However, most epidemiology visualizations do not support the…

Applications · Statistics 2023-04-25 Yu Dong , Christy Jie Liang , Yi Chen , Jie Hua
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