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Many questions in science center around the fundamental problem of understanding causal relationships. However, most constraint-based causal discovery algorithms, including the well-celebrated PC algorithm, often incur an exponential number…

Machine Learning · Computer Science 2024-06-05 Kirankumar Shiragur , Jiaqi Zhang , Caroline Uhler

We study the problem of experimental design for accurately identifying the causal graph structure of a simple structural causal model (SCM), where the underlying graph may include both cycles and bidirected edges induced by latent…

Machine Learning · Statistics 2025-09-03 Haijie Xu , Chen Zhang

Causal processes in biomedicine may contain cycles, evolve over time or differ between populations. However, many graphical models cannot accommodate these conditions. We propose to model causation using a mixture of directed cyclic graphs…

Machine Learning · Statistics 2020-09-08 Eric V. Strobl

Causal relationships among a set of variables are commonly represented by a directed acyclic graph. The orientations of some edges in the causal DAG can be discovered from observational/interventional data. Further edges can be oriented by…

Machine Learning · Computer Science 2022-05-30 Ramin Safaeian , Saber Salehkaleybar , Mahmoud Tabandeh

Inferring the causal relationships among a set of variables in the form of a directed acyclic graph (DAG) is an important but notoriously challenging problem. Recently, advancements in high-throughput genomic perturbation screens have…

Machine Learning · Computer Science 2025-10-03 Seong Woo Han , Daniel Duy Vo , Brielin C. Brown

Deep learning has become the standard approach for most machine learning tasks. While its impact is undeniable, interpreting the predictions of deep learning models from a human perspective remains a challenge. In contrast to model…

Machine Learning · Computer Science 2023-11-13 Kyriakos Axiotis , Sami Abu-al-haija , Lin Chen , Matthew Fahrbach , Gang Fu

Learning causal relationships between variables is a fundamental task in causal inference and directed acyclic graphs (DAGs) are a popular choice to represent the causal relationships. As one can recover a causal graph only up to its Markov…

Machine Learning · Computer Science 2024-02-14 Davin Choo , Kirankumar Shiragur

Causal DAGs(Directed Acyclic Graphs) are usually considered in a 2D plane. Edges indicate causal effects' directions and imply their corresponding time-passings. Due to the natural restriction of statistical models, effect estimation is…

Machine Learning · Computer Science 2023-09-26 Jia Li , Xiang Li , Xiaowei Jia , Michael Steinbach , Vipin Kumar

Recent advances have established the identifiability of a directed acyclic graph (DAG) under additive noise models (ANMs), spurring the development of various causal discovery methods. However, most existing methods make restrictive model…

Machine Learning · Statistics 2026-04-24 Stella Huang , Qing Zhou

In a nonparametric setting, the causal structure is often identifiable only up to Markov equivalence, and for the purpose of causal inference, it is useful to learn a graphical representation of the Markov equivalence class (MEC). In this…

Machine Learning · Statistics 2022-06-20 Xinwei Shen , Shengyu Zhu , Jiji Zhang , Shoubo Hu , Zhitang Chen

Directed Acyclic Graphs (DAGs) are central to uncovering causal structure in complex systems, yet learning a single DAG from data is often challenging: model uncertainty, finite samples, and a combinatorially large search space frequently…

Methodology · Statistics 2026-05-19 Yunan Wu , Yue Wang , Chunlin Li , Chenglong Ye

Random directed acyclic graphs (DAGs) based on imposing an order on Erd\H{o}s-R\'enyi and scale free random graphs are widely used for evaluating causal discovery algorithms. We show that in such DAGs, the set of nodes reachable via open…

Methodology · Statistics 2026-05-08 Alexander G. Reisach , Antoine Chambaz , Gilles Blanchard , Sebastian Weichwald

Causal graphs, such as directed acyclic graphs (DAGs) and partial ancestral graphs (PAGs), represent causal relationships among variables in a model. Methods exist for learning DAGs and PAGs from data and for converting DAGs to PAGs.…

Machine Learning · Statistics 2018-01-19 Nishant Subramani

We consider the problem of jointly estimating multiple related directed acyclic graph (DAG) models based on high-dimensional data from each graph. This problem is motivated by the task of learning gene regulatory networks based on gene…

Statistics Theory · Mathematics 2020-06-30 Yuhao Wang , Santiago Segarra , Caroline Uhler

A common theme in causal inference is learning causal relationships between observed variables, also known as causal discovery. This is usually a daunting task, given the large number of candidate causal graphs and the combinatorial nature…

Machine Learning · Statistics 2022-10-11 Romain Lopez , Jan-Christian Hütter , Jonathan K. Pritchard , Aviv Regev

The paper concerns the problem of predicting the effect of actions or interventions on a system from a combination of (i) statistical data on a set of observed variables, and (ii) qualitative causal knowledge encoded in the form of a…

Artificial Intelligence · Computer Science 2012-07-02 Carlos Brito , Judea Pearl

This article proposes a novel causal discovery and inference method called GrIVET for a Gaussian directed acyclic graph with unmeasured confounders. GrIVET consists of an order-based causal discovery method and a likelihood-based…

Methodology · Statistics 2023-09-22 Li Chen , Chunlin Li , Xiaotong Shen , Wei Pan

The problem of learning a directed acyclic graph (DAG) up to Markov equivalence is equivalent to the problem of finding a permutation of the variables that induces the sparsest graph. Without additional assumptions, this task is known to be…

Methodology · Statistics 2020-11-10 Chandler Squires , Joshua Amaniampong , Caroline Uhler

Discrete Morse theory emerged as an essential tool for computational geometry and topology. Its core structures are discrete gradient fields, defined as acyclic matchings on a complex $C$, from which topological and geometrical informations…

Geometric Topology · Mathematics 2018-01-31 Joao Paixao , Joao Lagoas , Thomas Lewiner , Tiago Novello

Interactive graph search (IGS) uses human intelligence to locate the target node in hierarchy, which can be applied for image classification, product categorization and searching a database. Specifically, IGS aims to categorize an object…

Databases · Computer Science 2022-01-21 Qianhao Cong , Jing Tang , Yuming Huang , Lei Chen , Yeow Meng Chee