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As the interest to Graph Neural Networks (GNNs) is growing, the importance of benchmarking and performance characterization studies of GNNs is increasing. So far, we have seen many studies that investigate and present the performance and…

Machine Learning · Computer Science 2022-12-21 Taha Tekdoğan , Serkan Göktaş , Ayse Yilmazer-Metin

We introduce the ParClusterers Benchmark Suite (PCBS) -- a collection of highly scalable parallel graph clustering algorithms and benchmarking tools that streamline comparing different graph clustering algorithms and implementations. The…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-11-18 Shangdi Yu , Jessica Shi , Jamison Meindl , David Eisenstat , Xiaoen Ju , Sasan Tavakkol , Laxman Dhulipala , Jakub Łącki , Vahab Mirrokni , Julian Shun

We present a graph processing benchmark suite with the goal of helping to standardize graph processing evaluations. Fewer differences between graph processing evaluations will make it easier to compare different research efforts and…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-05-18 Scott Beamer , Krste Asanović , David Patterson

Graph Neural Networks (GNNs) have recently gained traction in symbolic music tasks, yet a lack of a unified framework impedes progress. Addressing this gap, we present GraphMuse, a graph processing framework and library that facilitates…

Sound · Computer Science 2024-07-18 Emmanouil Karystinaios , Gerhard Widmer

Graph Pattern Mining (GPM) extracts higher-order information in a large graph by searching for small patterns of interest. GPM applications are computationally expensive, and thus attractive for GPU acceleration. Unfortunately, due to the…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-07-28 Xuhao Chen , Arvind

Several graph visualization tools exist. However, they are not able to handle large graphs, and/or they do not allow interaction. We are interested on large graphs, with hundreds of thousands of nodes. Such graphs bring two challenges: the…

Social and Information Networks · Computer Science 2015-06-15 Jose Rodrigues , Hanghang Tong , Agma Traina , Christos Faloutsos , Jure Leskovec

Graph mining for structural patterns is a fundamental task in many applications. Compilation-based graph mining systems, represented by AutoMine, generate specialized algorithms for the provided patterns and substantially outperform other…

Performance · Computer Science 2019-12-02 Daniel Mawhirter , Sam Reinehr , Connor Holmes , Tongping Liu , Bo Wu

Graph mining applications, such as subgraph pattern matching and mining, are widely used in real-world domains such as bioinformatics, social network analysis, and computer vision. Such applications are considered a new class of…

Hardware Architecture · Computer Science 2023-06-21 Jiya Su , Peng Jiang , Rujia Wang

High-performance implementations of graph algorithms are challenging to implement on new parallel hardware such as GPUs because of three challenges: (1) the difficulty of coming up with graph building blocks, (2) load imbalance on parallel…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-06-16 Carl Yang , Aydin Buluc , John D. Owens

Graph machine learning (GML) is effective in many business applications. However, making GML easy to use and applicable to industry applications with massive datasets remain challenging. We developed GraphStorm, which provides an end-to-end…

Feature-based image matching has extensive applications in computer vision. Keypoints detected in images can be naturally represented as graph structures, and Graph Neural Networks (GNNs) have been shown to outperform traditional deep…

Computer Vision and Pattern Recognition · Computer Science 2025-08-29 Xianfeng Song , Yi Zou , Zheng Shi , Zheng Liu

Current applications have produced graphs on the order of hundreds of thousands of nodes and millions of edges. To take advantage of such graphs, one must be able to find patterns, outliers and communities. These tasks are better performed…

Social and Information Networks · Computer Science 2015-05-29 Jose F. Rodrigues , Hanghang Tong , Jia-Yu Pan , Agma J. M. Traina , Caetano Traina , Christos Faloutsos

We present GNN-Suite, a robust modular framework for constructing and benchmarking Graph Neural Network (GNN) architectures in computational biology. GNN-Suite standardises experimentation and reproducibility using the Nextflow workflow to…

Machine Learning · Computer Science 2025-05-19 Sebestyén Kamp , Giovanni Stracquadanio , T. Ian Simpson

Subgraph matching is a core operation in graph analytics, supporting a broad spectrum of applications from social network analysis to bioinformatics. Recent GPU-based approaches accelerate subgraph matching by leveraging parallelism but…

Databases · Computer Science 2026-04-14 Weitian Chen , Shixuan Sun , Cheng Chen , Yongmin Hu , Yingqian Hu , Minyi Guo

Foundation Models (FMs) serve as a general class for the development of artificial intelligence systems, offering broad potential for generalization across a spectrum of downstream tasks. Despite extensive research into self-supervised…

Machine Learning · Computer Science 2024-06-17 Yuhao Xu , Xinqi Liu , Keyu Duan , Yi Fang , Yu-Neng Chuang , Daochen Zha , Qiaoyu Tan

Graph Structure Learning (GSL) has recently garnered considerable attention due to its ability to optimize both the parameters of Graph Neural Networks (GNNs) and the computation graph structure simultaneously. Despite the proliferation of…

Machine Learning · Computer Science 2023-10-10 Zhixun Li , Liang Wang , Xin Sun , Yifan Luo , Yanqiao Zhu , Dingshuo Chen , Yingtao Luo , Xiangxin Zhou , Qiang Liu , Shu Wu , Liang Wang , Jeffrey Xu Yu

Machine learning on graphs has made substantial progress across domains such as molecular property prediction and chip design. Yet benchmarking practices remain fragmented, often relying on narrow, task-specific datasets and inconsistent…

Graph Neural Networks (GNNs) have emerged as powerful tools for various graph mining tasks, yet existing scalable solutions often struggle to balance execution efficiency with prediction accuracy. These difficulties stem from iterative…

Machine Learning · Computer Science 2026-04-02 Xu Cheng , Liang Yao , Feng He , Yukuo Cen , Yufei He , Chenhui Zhang , Wenzheng Feng , Hongyun Cai , Jie Tang

Graph pattern mining (GPM) is an important application that identifies structures from graphs. Despite the recent progress, the performance gap between the state-of-the-art GPM systems and an efficient algorithm--pattern decomposition--is…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-11-14 Jingji Chen , Xuehai Qian

Graph Pattern Mining (GPM) is an important, rapidly evolving, and computation demanding area. GPM computation relies on subgraph enumeration, which consists in extracting subgraphs that match a given property from an input graph. Graphics…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-12 Samuel Ferraz , Vinicius Dias , Carlos H. C. Teixeira , George Teodoro , Wagner Meira
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