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We present an introduction to some concepts of Bayesian data analysis in the context of atomic physics. Starting from basic rules of probability, we present the Bayes' theorem and its applications. In particular we discuss about how to…

Data Analysis, Statistics and Probability · Physics 2024-01-30 Martino Trassinelli

As a fundamental problem in pattern recognition, graph matching has applications in a variety of fields, from computer vision to computational biology. In graph matching, patterns are modeled as graphs and pattern recognition amounts to…

Computer Vision and Pattern Recognition · Computer Science 2008-06-19 Tiberio S. Caetano , Julian J. McAuley , Li Cheng , Quoc V. Le , Alex J. Smola

By merging algorithmic Matsubara integration with discrete pole representations we present a procedure to generate fully analytic closed form results for impurity problems at fixed perturbation order. To demonstrate the utility of this…

Strongly Correlated Electrons · Physics 2024-07-02 Daria Gazizova , Lei Zhang , Emanuel Gull , J. P. F. LeBlanc

We compute spectra of large stochastic matrices $W$, defined on sparse random graphs, where edges $(i,j)$ of the graph are given positive random weights $W_{ij}>0$ in such a fashion that column sums are normalized to one. We compute spectra…

Disordered Systems and Neural Networks · Physics 2015-06-23 Reimer Kuehn

Neutron and X-ray reflectometry are powerful techniques facilitating the study of the structure of interfacial materials. The analysis of these techniques is ill-posed in nature requiring the application of a model-dependent methods. This…

Soft Condensed Matter · Physics 2022-07-22 Andrew R. McCluskey , Thomas Arnold , Joshaniel F. K. Cooper , Tim Snow

Large data applications rely on storing data in massive, sparse graphs with millions to trillions of nodes. Graph-based methods, such as node prediction, aim for computational efficiency regardless of graph size. Techniques like localized…

Data Structures and Algorithms · Computer Science 2025-07-08 Yushen Huang , Ertai Luo , Reza Babenezhad , Yifan Sun

In mathematical optimization, second-order Newton's methods generally converge faster than first-order methods, but they require the inverse of the Hessian, hence are computationally expensive. However, we discover that on sparse graphs,…

Machine Learning · Computer Science 2022-05-30 Nima Dehmamy , Csaba Both , Jianzhi Long , Rose Yu

A scheme to provide various mean-field-type approximation algorithms is presented by employing the Bethe free energy formalism to a family of replicated systems in conjunction with analytical continuation with respect to the number of…

Disordered Systems and Neural Networks · Physics 2009-11-11 Yoshiyuki Kabashima

When network and graph theory are used in the study of complex systems, a typically finite set of nodes of the network under consideration is frequently either explicitly or implicitly considered representative of a much larger finite or…

Data Analysis, Statistics and Probability · Physics 2015-03-18 Jobst Heitzig , Jonathan F. Donges , Yong Zou , Norbert Marwan , Jürgen Kurths

We consider weighted tiling systems to represent functions from graphs to a commutative semiring such as the Natural semiring or the Tropical semiring. The system labels the nodes of a graph by its states, and checks if the neighbourhood of…

Formal Languages and Automata Theory · Computer Science 2020-10-01 C. Aiswarya , Paul Gastin

Random graphs are statistical models that have many applications, ranging from neuroscience to social network analysis. Of particular interest in some applications is the problem of testing two random graphs for equality of generating…

Methodology · Statistics 2024-01-08 Anton A. Alyakin , Joshua Agterberg , Hayden S. Helm , Carey E. Priebe

Graphene is of great scientific interest due to a variety of unique properties such as ballistic transport, spin selectivity, the quantum hall effect, and other quantum properties. Nanopatterning and atomic scale modifications of graphene…

Mesoscale and Nanoscale Physics · Physics 2023-07-13 Ondrej Dyck , Sinchul Yeom , Sarah Dillender , Andrew R. Lupini , Mina Yoon , Stephen Jesse

Spectral graph sparsification has emerged as a powerful tool in the analysis of large-scale networks by reducing the overall number of edges, while maintaining a comparable graph Laplacian matrix. In this paper, we present an efficient…

Data Structures and Algorithms · Computer Science 2014-12-16 David G. Anderson , Ming Gu , Christopher Melgaard

We consider probe-based quantum thermometry and show that machine classification can provide model-independent estimation with quantifiable error assessment. Our approach is based on the k-nearest-neighbor algorithm. The machine is trained…

Quantum Physics · Physics 2022-02-23 Fabrício S. Luiz , A. de Oliveira Junior , Felipe F. Fanchini , Gabriel T. Landi

Inverse problems are of great importance in astrophysics for deriving information about the physical characteristics of hot optically thin plasma sources from their EUV and X-ray spectra. We describe and test an iterative method developed…

Solar and Stellar Astrophysics · Physics 2014-01-24 F. F. Goryaev , S. Parenti , A. M. Urnov , S. N. Oparin , J. -F. Hochedez , F. Reale

We present a framework for learning Node Embeddings from Static Subgraphs (NESS) using a graph autoencoder (GAE) in a transductive setting. NESS is based on two key ideas: i) Partitioning the training graph to multiple static, sparse…

Machine Learning · Computer Science 2023-05-24 Talip Ucar

Graph attention networks learn neighbor importance through data-dependent coefficients, but standard layers lack explicit control over unreliable feature dimensions and use fixed sharpness of attention coefficient distributions. This paper…

Machine Learning · Computer Science 2026-05-29 Zhongtian Ma , Hao Wu , Yexin Zhang , Qiaosheng Zhang , Zhen Wang

In this work we show that there is a direct relationship between a graph's topology and the free energy of a spin system on the graph. We develop a method of separating topological and enthalpic contributions to the free energy, and find…

Statistical Mechanics · Physics 2017-03-01 Jeong-Mo Choi , Amy I. Gilson , Eugene I. Shakhnovich

We consider the problem of searching for a node on a labelled random graph according to a greedy algorithm that selects a route to the desired node using metric information on the graph. Motivated by peer-to-peer networks two types of…

Statistical Mechanics · Physics 2013-05-29 David Lancaster

The network alignment (or graph matching) problem refers to recovering the node-to-node correspondence between two correlated networks. In this paper, we propose a network alignment algorithm which works without using a seed set of…

Data Structures and Algorithms · Computer Science 2020-09-29 Mahdi Bozorg , Saber Salehkaleybar , Matin Hashemi