Related papers: An Almost Optimal Edit Distance Oracle

Let $G$ be an unweighted, undirected graph. An additive $k$-spanner of $G$ is a subgraph $H$ that approximates all distances between pairs of nodes up to an additive error of $+k$, that is, it satisfies $d_H(u,v) \le d_G(u,v)+k$ for all…

We study the classical approximate string matching problem, that is, given strings $P$ and $Q$ and an error threshold $k$, find all ending positions of substrings of $Q$ whose edit distance to $P$ is at most $k$. Let $P$ and $Q$ have…

We design $f$-edge fault-tolerant diameter oracles ($f$-FDOs). We preprocess a given graph $G$ on $n$ vertices and $m$ edges, and a positive integer $f$, to construct a data structure that, when queried with a set $F$ of $|F| \leq f$ edges,…

SimRank is a similarity measure for graph nodes that has numerous applications in practice. Scalable SimRank computation has been the subject of extensive research for more than a decade, and yet, none of the existing solutions can…

Edit distance is a measurement of similarity between two sequences such as strings, point sequences, or polygonal curves. Many matching problems from a variety of areas, such as signal analysis, bioinformatics, etc., need to be solved in a…

Given a set $S$ of $n$ points in the plane, we study the two-line-center problem: finding two lines that minimize the maximum distance from each point in $S$ to its closest line. We present a $(1+\varepsilon)$-approximation algorithm for…

We study the classic Text-to-Pattern Hamming Distances problem: given a pattern $P$ of length $m$ and a text $T$ of length $n$, both over a polynomial-size alphabet, compute the Hamming distance between $P$ and $T[i\, .\, . \, i+m-1]$ for…

Let two static sequences of strings $P$ and $S$, representing prefix and suffix conditions respectively, be given as input for preprocessing. For the query, let two positive integers $k_1$ and $k_2$ be given, as well as a string $T$ given…

In the snippets problem, the goal is to preprocess text $T$ so that given two patterns $P_1$ and $P_2$, one can locate the occurrences of the two patterns in $T$ that are closest to each other, or report their distance. Kopelowitz and…

Given a pattern string $P$ of length $n$ and a query string $T$ of length $m$, where the characters of $P$ and $T$ are drawn from an alphabet of size $\Delta$, the {\em exact string matching} problem consists of finding all occurrences of…

We consider the problem of querying a string (or, a database) of length $N$ bits to determine all the locations where a substring (query) of length $M$ appears either exactly or is within a Hamming distance of $K$ from the query. We assume…

Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…

Let $\mathcal{P}$ be a set of $h$ pairwise-disjoint polygonal obstacles with a total of $n$ vertices in the plane. We consider the problem of building a data structure that can quickly compute an $L_1$ shortest obstacle-avoiding path…

We study quantum algorithms for several fundamental string problems, including Longest Common Substring, Lexicographically Minimal String Rotation, and Longest Square Substring. These problems have been widely studied in the stringology…

A Random Access query to a string $T\in [0..\sigma)^n$ asks for the character $T[i]$ at a given position $i\in [0..n)$. In $O(n\log\sigma)$ bits of space, this fundamental task admits constant-time queries. While this is optimal in the…

We combine ideas from distance sensitivity oracles (DSOs) and fixed-parameter tractability (FPT) to design sensitivity oracles for FPT graph problems. An oracle with sensitivity $f$ for an FPT problem $\Pi$ on a graph $G$ with parameter $k$…

We study the problem of designing \emph{sublinear spectral clustering oracles} for well-clusterable graphs. Such an oracle is an algorithm that, given query access to the adjacency list of a graph $G$, first constructs a compact data…

In the \emph{$k$-Diameter-Optimally Augmenting Tree Problem} we are given a tree $T$ of $n$ vertices as input. The tree is embedded in an unknown \emph{metric} space and we have unlimited access to an oracle that, given two distinct…

An $f$-edge fault-tolerant distance sensitive oracle ($f$-DSO) with stretch $\sigma \geq 1$ is a data structure that preprocesses an input graph $G$. When queried with the triple $(s,t,F)$, where $s, t \in V$ and $F \subseteq E$ contains at…

Given a pair of strings, the problems of computing their Longest Common Subsequence and Edit Distance have been extensively studied for decades. For exact algorithms, LCS and Edit Distance (with character insertions and deletions) are…