Related papers: An Almost Optimal Edit Distance Oracle
Given an undirected, unweighted planar graph $G$ with $n$ vertices, we present a truly subquadratic size distance oracle for reporting exact shortest-path distances between any pair of vertices of $G$ in constant time. For any $\varepsilon…
Thorup [FOCS'01, JACM'04] and Klein [SODA'01] independently showed that there exists a $(1+\epsilon)$-approximate distance oracle for planar graphs with $O(n (\log n)\epsilon^{-1})$ space and $O(\epsilon^{-1})$ query time. While the…
Under the word RAM model, we design three data structures that can be constructed in $O(n\sqrt{\lg n})$ time over $n$ points in an $n \times n$ grid. The first data structure is an $O(n\lg^{\epsilon} n)$-word structure supporting orthogonal…
The edit distance is a way of quantifying how similar two strings are to one another by counting the minimum number of character insertions, deletions, and substitutions required to transform one string into the other. In this paper we…
In the classic longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, over an alphabet of size $\sigma$, and we are asked to find a longest string occurring as a fragment of both $S$ and…
In many applications, it is necessary to determine the string similarity. Edit distance[WF74] approach is a classic method to determine Field Similarity. A well known dynamic programming algorithm [GUS97] is used to calculate edit distance…
In this paper, we design new sublinear-time algorithms for solving the gap edit distance problem and for embedding edit distance to Hamming distance. For the gap edit distance problem, we give an $\tilde{O}(\frac{n}{k}+k^2)$-time greedy…
We present an approximate distance oracle for a point set S with n points and doubling dimension {\lambda}. For every {\epsilon}>0, the oracle supports (1+{\epsilon})-approximate distance queries in (universal) constant time, occupies space…
There are efficient dynamic programming solutions to the computation of the Edit Distance from $S\in[1..\sigma]^n$ to $T\in[1..\sigma]^m$, for many natural subsets of edit operations, typically in time within $O(nm)$ in the worst-case over…
Let $G = (V, E)$ be an undirected graph with $n$ vertices and $m$ edges, and let $\mu = m/n$. A \emph{distance oracle} is a data structure designed to answer approximate distance queries, with the goal of achieving low stretch, efficient…
The {\em edit distance} between two ordered trees with vertex labels is the minimum cost of transforming one tree into the other by a sequence of elementary operations consisting of deleting and relabeling existing nodes, as well as…
In the longest common substring (LCS) problem, we are given two strings $S$ and $T$, each of length at most $n$, and we are asked to find a longest string occurring as a fragment of both $S$ and $T$. This is a classical and well-studied…
The classic exact pattern matching problem, given two strings -- a pattern $P$ of length $m$ and a text $T$ of length $n$ -- asks whether $P$ occurs as a substring of $T$. A property tester for the problem needs to distinguish (with high…
Given an undirected unweighted graph $G$ and a source set $S$ of $|S| = \sigma $ sources, we want to build a data structure which can process the following query {\sc Q}$(s,t,e):$ find the shortest distance from $s$ to $t$ avoiding an edge…
We study the problem of approximating edit distance in sublinear time. This is formalized as the $(k,k^c)$-Gap Edit Distance problem, where the input is a pair of strings $X,Y$ and parameters $k,c>1$, and the goal is to return YES if…
Given an undirected weighted graph, an (approximate) distance oracle is a data structure that can (approximately) answer distance queries. A {\em Path-Reporting Distance Oracle}, or {\em PRDO}, is a distance oracle that must also return a…
We consider the following model for sampling pairs of strings: $s_1$ is a uniformly random bitstring of length $n$, and $s_2$ is the bitstring arrived at by applying substitutions, insertions, and deletions to each bit of $s_1$ with some…
We revisit a fundamental problem in string matching: given a pattern of length m and a text of length n, both over an alphabet of size $\sigma$, compute the Hamming distance between the pattern and the text at every location. Several…
We study the maximum $s,t$-flow oracle problem on planar directed graphs where the goal is to design a data structure answering max $s,t$-flow value (or equivalently, min $s,t$-cut value) queries for arbitrary source-target pairs $(s,t)$.…
We examine the amount of preprocessing needed for answering certain on-line queries as fast as possible. We start with the following basic problem. Suppose we are given a semigroup $(S,\circ )$. Let $s_1 ,\ldots, s_n$ be elements of $S$. We…