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Related papers: GenoML: Automated Machine Learning for Genomics

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The dramatic increase of complex, multi-step, and rapidly evolving attacks in dynamic networks involves advanced cyber-threat detectors. The GPML (Graph Processing for Machine Learning) library addresses this need by transforming raw…

Machine Learning · Computer Science 2025-05-15 Majed Jaber , Julien Michel , Nicolas Boutry , Pierre Parrend

Modern advanced analytics applications make use of machine learning techniques and contain multiple steps of domain-specific and general-purpose processing with high resource requirements. We present KeystoneML, a system that captures and…

Machine Learning · Computer Science 2016-11-01 Evan R. Sparks , Shivaram Venkataraman , Tomer Kaftan , Michael J. Franklin , Benjamin Recht

Automated machine learning (AutoML) accelerates AI development by automating tasks in the development pipeline, such as optimal model search and hyperparameter tuning. Existing AutoML systems often require technical expertise to set up…

Machine Learning · Computer Science 2025-06-09 Patara Trirat , Wonyong Jeong , Sung Ju Hwang

Any cutting-edge scientific research project requires a myriad of computational tools for data generation, management, analysis and visualization. Python is a flexible and extensible scientific programming platform that offered the perfect…

Quantitative Methods · Quantitative Biology 2008-03-14 Julius B. Lucks

This paper discusses modern Auto Machine Learning (AutoML) tools from the perspective of a person with little prior experience in Machine Learning (ML). There are many AutoML tools both ready-to-use and under development, which are created…

Machine Learning · Computer Science 2021-01-18 Oleg Bezrukavnikov , Rhema Linder

Machine learning model development and optimisation can be a rather cumbersome and resource-intensive process. Custom models are often more difficult to build and deploy, and they require infrastructure and expertise which are often costly…

The yaglm package aims to make the broader ecosystem of modern generalized linear models accessible to data analysts and researchers. This ecosystem encompasses a range of loss functions (e.g. linear, logistic, quantile regression),…

Computation · Statistics 2021-10-13 Iain Carmichael , Thomas Keefe , Naomi Giertych , Jonathan P Williams

Organizations have realized the importance of data analysis and its benefits. This in combination with Machine Learning algorithms has allowed to solve problems more easily, making these processes less time-consuming. Neural networks are…

Neural and Evolutionary Computing · Computer Science 2022-04-19 Alvaro J. Garcia-Tejedor , Alberto Nogales

The surge in high-throughput omics data has reshaped the landscape of biological research, underlining the need for powerful, user-friendly data analysis and interpretation tools. This paper presents GenoCraft, a web-based comprehensive…

Automated machine learning (AutoML) is a collection of techniques designed to automate the machine learning development process. While traditional AutoML approaches have been successfully applied in several critical steps of model…

Machine Learning · Computer Science 2024-12-30 Zekang Yang , Wang Zeng , Sheng Jin , Chen Qian , Ping Luo , Wentao Liu

In recent years, an active field of research has developed around automated machine learning (AutoML). Unfortunately, comparing different AutoML systems is hard and often done incorrectly. We introduce an open, ongoing, and extensible…

Machine Learning · Computer Science 2019-07-02 Pieter Gijsbers , Erin LeDell , Janek Thomas , Sébastien Poirier , Bernd Bischl , Joaquin Vanschoren

The integration of machine learning in medical image analysis can greatly enhance the quality of healthcare provided by physicians. The combination of human expertise and computerized systems can result in improved diagnostic accuracy. An…

We present Glyph - a Python package for genetic programming based symbolic regression. Glyph is designed for usage let by numerical simulations let by real world experiments. For experimentalists, glyph-remote provides a separation of…

Mathematical Software · Computer Science 2018-03-22 Markus Quade , Julien Gout , Markus Abel

Automated Machine Learning (AutoML) offers a promising approach to streamline the training of machine learning models. However, existing AutoML frameworks are often limited to unimodal scenarios and require extensive manual configuration.…

Machine Learning · Computer Science 2024-08-02 Daqin Luo , Chengjian Feng , Yuxuan Nong , Yiqing Shen

We present an AutoML system called LightAutoML developed for a large European financial services company and its ecosystem satisfying the set of idiosyncratic requirements that this ecosystem has for AutoML solutions. Our framework was…

Machine Learning · Computer Science 2022-04-06 Anton Vakhrushev , Alexander Ryzhkov , Maxim Savchenko , Dmitry Simakov , Rinchin Damdinov , Alexander Tuzhilin

In recent years, machine learning technologies have played an important role in robotics, particularly in the development of autonomous robots and self-driving vehicles. As the industry matures, robotics frameworks like ROS 2 have been…

Gene Ontology (GO) is the most important resource for gene function annotation. It provides a way to unify biological knowledge across different species via a dynamic and controlled vocabulary. GO is now widely represented in the Semantic…

Genomics · Quantitative Biology 2019-09-26 Yanying Wu

Compiler architects increasingly look to machine learning when building heuristics for compiler optimization. The promise of automatic heuristic design, freeing the compiler engineer from the complex interactions of program, architecture,…

Programming Languages · Computer Science 2020-12-04 Chris Cummins , Hugh Leather , Zacharias Fisches , Tal Ben-Nun , Torsten Hoefler , Michael O'Boyle

Recent years have witnessed an upsurge in research interests and applications of machine learning on graphs. However, manually designing the optimal machine learning algorithms for different graph datasets and tasks is inflexible,…

In the past decade, transcriptome data have become an important component of many phylogenetic studies. Phylogenetic studies now regularly include genes from newly sequenced transcriptomes, as well as publicly available transcriptomes and…

Genomics · Quantitative Biology 2014-01-14 Casey W. Dunn , Mark Howison , Felipe Zapata