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w-Projection is a wide-field imaging technique that is widely used in radio synthesis arrays. Processing the wide-field big data generated by the future Square Kilometre Array (SKA) will require significant updates to current methods to…

Instrumentation and Methods for Astrophysics · Physics 2019-11-11 Baoqiang Lao , Tao An , Ang Yu , Wenhui Zhang , Junyi Wang , Quan Guo , Shaoguang Guo , Xiaocong Wu

PetscSF, the communication component of the Portable, Extensible Toolkit for Scientific Computation (PETSc), is designed to provide PETSc's communication infrastructure suitable for exascale computers that utilize GPUs and other…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-05-25 Junchao Zhang , Jed Brown , Satish Balay , Jacob Faibussowitsch , Matthew Knepley , Oana Marin , Richard Tran Mills , Todd Munson , Barry F. Smith , Stefano Zampini

We present an efficient open-source implementation of the multiparticle collision dynamics (MPCD) algorithm that scales to run on hundreds of graphics processing units (GPUs). We especially focus on optimizations for modern GPU…

Soft Condensed Matter · Physics 2018-08-01 Michael P. Howard , Athanassios Z. Panagiotopoulos , Arash Nikoubashman

Gradient descent (GD) methods are commonly employed in machine learning problems to optimize the parameters of the model in an iterative fashion. For problems with massive datasets, computations are distributed to many parallel computing…

Information Theory · Computer Science 2019-03-06 Emre Ozfatura , Deniz Gunduz , Sennur Ulukus

Upcoming HPC clusters will feature hybrid memories and storage devices per compute node. In this work, we propose to use the MPI one-sided communication model and MPI windows as unique interface for programming memory and storage. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-10-10 Sergio Rivas-Gomez , Roberto Gioiosa , Ivy Bo Peng , Gokcen Kestor , Sai Narasimhamurthy , Erwin Laure , Stefano Markidis

Heterogeneous systems are becoming more common on High Performance Computing (HPC) systems. Even using tools like CUDA and OpenCL it is a non-trivial task to obtain optimal performance on the GPU. Approaches to simplifying this task include…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-01-11 Marek Blazewicz , Steven R. Brandt , Peter Diener , David M. Koppelman , Krzysztof Kurowski , Frank Löffler , Erik Schnetter , Jian Tao

Parallel code design is a challenging task especially when addressing petascale systems for massive parallel processing (MPP), i.e. parallel computations on several hundreds of thousands of cores. An in-house computational fluid dynamics…

Performance · Computer Science 2018-07-03 Jérôme Frisch , Ralf-Peter Mundani

The relaxed semantics and rich functionality of one-sided communication primitives of MPI-3 makes MPI an attractive candidate for the implementation of PGAS models. However, the performance of such implementation suffers from the fact, that…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-03-08 Huan Zhou , Kamran Idrees , José Gracia

In this work we evaluate the potential of FPGAs for accelerating HPC workloads as a more power-efficient alternative to GPUs. Using High-Level Synthesis and a large set of optimization techniques, we show that FPGAs can achieve better…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-09-17 Hamid Reza Zohouri

This paper shows the development of a multi-GPU version of a time-explicit finite volume solver for the Shallow-Water Equations (SWE) on a multi-GPU architecture. MPI is combined with CUDA-Fortran in order to use as many GPUs as needed. The…

Computational Physics · Physics 2023-03-03 Vincent Delmas , Azzedine Soulaïmani

Bandwidth-starved multicore chips have become ubiquitous. It is well known that the performance of stencil codes can be improved by temporal blocking, lessening the pressure on the memory interface. We introduce a new pipelined approach…

Distributed, Parallel, and Cluster Computing · Computer Science 2010-06-17 Markus Wittmann , Georg Hager , Jan Treibig , Gerhard Wellein

FASTEST-3D is an MPI-parallel finite-volume flow solver based on block-structured meshes that has been developed at the University of Erlangen-Nuremberg since the early 1990s. It can be used to solve the laminar or turbulent incompressible…

Performance · Computer Science 2013-03-20 Christoph Scheit , Georg Hager , Jan Treibig , Stefan Becker , Gerhard Wellein

We consider the problem of how to reduce the cost of communication that is required for the parallel training of a neural network. The state-of-the-art method, Bulk Synchronous Parallel Stochastic Gradient Descent (BSP-SGD), requires many…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-18 Linnan Wang , Wei Wu , George Bosilca , Richard Vuduc , Zenglin Xu

The performance of CPU-based and GPU-based systems is often low for PDE codes, where large, sparse, and often structured systems of linear equations must be solved. Iterative solvers are limited by data movement, both between caches and…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-10-09 Kamil Rocki , Dirk Van Essendelft , Ilya Sharapov , Robert Schreiber , Michael Morrison , Vladimir Kibardin , Andrey Portnoy , Jean Francois Dietiker , Madhava Syamlal , Michael James

With multi-core processors a ubiquitous building block of modern supercomputers, it is now past time to enable applications to embrace these developments in processor design. To achieve exascale performance, applications will need ways of…

Distributed, Parallel, and Cluster Computing · Computer Science 2012-08-13 Michele Weiland , Lawrence Mitchell , Gerard Gorman , Stephan Kramer , Mark Parsons , James Southern

This paper investigates the parallelization of Dijkstra's algorithm for computing the shortest paths in large-scale graphs using MPI and CUDA. The primary hypothesis is that by leveraging parallel computing, the computation time can be…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-04-08 Boyang Song

We describe an implementation of compressible inviscid fluid solvers with block-structured adaptive mesh refinement on Graphics Processing Units using NVIDIA's CUDA. We show that a class of high resolution shock capturing schemes can be…

Cosmology and Nongalactic Astrophysics · Physics 2014-11-20 Peng Wang , Tom Abel , Ralf Kaehler

We present an efficient approach for writing architecture-agnostic parallel high-performance stencil computations in Julia, which is instantiated in the package ParallelStencil.jl. Powerful metaprogramming, costless abstractions and…

Distributed, Parallel, and Cluster Computing · Computer Science 2022-12-01 Samuel Omlin , Ludovic Räss

Multi-GPU nodes are increasingly common in the rapidly evolving landscape of exascale supercomputers. On these systems, GPUs on the same node are connected through dedicated networks, with bandwidths up to a few terabits per second.…

The advancement of artificial intelligence demands flexible multimodal data processing with high throughput and energy efficiency. Photonic integrated circuits (PIC) has demonstrated promising potentials in terms of low latency and low…

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