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We present Coord2Region, an open-source Python package that streamlines coordinate-based neuroimaging workflows by automatically mapping 3D brain coordinates (e.g., MNI or Talairach) to anatomical regions across multiple atlases. The…

Neurons and Cognition · Quantitative Biology 2025-12-23 Hamza Abdelhedi , Yorguin-Jose Mantilla-Ramos , Sina Esmaeili , Annalisa Pascarella , Vanessa Hadid , Karim Jerbi

Text-to-CAD code generation is a long-horizon task that translates textual instructions into long sequences of interdependent operations. Existing methods typically decode text directly into executable code (e.g., bpy) without explicitly…

Artificial Intelligence · Computer Science 2026-04-14 Shengjie Gong , Wenjie Peng , Hongyuan Chen , Gangyu Zhang , Yunqing Hu , Huiyuan Zhang , Shuangping Huang , Tianshui Chen

In 3D scene understanding, deep learning models rely on large models and extensive training to capture basic geometric structures that are present in the 3D data. However, existing methods lack explicit mechanisms to incorporate geometric…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 Diogo Lavado , Alessandra Micheletti , Clàudia Soares

BondGraphTools is a Python library for scripted modelling of complex multi-physics systems. In contrast to existing modelling solutions, BondGraphTools is based upon the well established bond graph methodology, provides a programming…

Systems and Control · Electrical Eng. & Systems 2019-06-27 Peter Cudmore , Peter J. Gawthrop , Michael Pan , Edmund J. Crampin

G-code (Geometric code) or RS-274 is the most widely used computer numerical control (CNC) and 3D printing programming language. G-code provides machine instructions for the movement of the 3D printer, especially for the nozzle, stage, and…

Computer Vision and Pattern Recognition · Computer Science 2025-09-09 Anushrut Jignasu , Kelly O. Marshall , Ankush Kumar Mishra , Lucas Nerone Rillo , Baskar Ganapathysubramanian , Aditya Balu , Chinmay Hegde , Adarsh Krishnamurthy

This paper reports the development of a Python Non-Uniform Fast Fourier Transform (PyNUFFT) package, which accelerates non-Cartesian image reconstruction on heterogeneous platforms. Scientific computing with Python encompasses a mature and…

Medical Physics · Physics 2017-10-10 Jyh-Miin Lin

Manual slide creation is labor-intensive and requires expert prior knowledge. Existing natural language-based LLM generation methods struggle to capture the visual and structural nuances of slide designs. To address this, we formalize the…

Computer Vision and Pattern Recognition · Computer Science 2025-06-10 Wenxin Tang , Jingyu Xiao , Wenxuan Jiang , Xi Xiao , Yuhang Wang , Xuxin Tang , Qing Li , Yuehe Ma , Junliang Liu , Shisong Tang , Michael R. Lyu

Graphic design generation demands a delicate balance between high visual fidelity and fine-grained structural editability. However, existing approaches typically bifurcate into either non-editable raster image synthesis or abstract layout…

Graphics · Computer Science 2026-02-24 Ziyuan Liu , Shizhao Sun , Danqing Huang , Yingdong Shi , Meisheng Zhang , Ji Li , Jingsong Yu , Jiang Bian

Structure-based drug design (SBDD) leverages the three-dimensional geometry of proteins to identify potential drug candidates. Traditional approaches, rooted in physicochemical modeling and domain expertise, are often resource-intensive.…

Quantitative Methods · Quantitative Biology 2024-11-19 Zaixi Zhang , Jiaxian Yan , Yining Huang , Qi Liu , Enhong Chen , Mengdi Wang , Marinka Zitnik

High-level synthesis (HLS) tools have brought FPGA development into the mainstream, by allowing programmers to design architectures using familiar languages such as C, C++, and OpenCL. While the move to these languages has brought…

Hardware Architecture · Computer Science 2019-10-11 Johannes de Fine Licht , Torsten Hoefler

In the recent decade, computational tools have become central in material design, allowing rapid development cycles at reduced costs. Machine learning tools are especially on the rise in photonics. However, the inversion of the Maxwell…

Bodge is a free and open-source Python package for constructing large-scale real-space tight-binding models for calculations in condensed matter physics. "Large-scale" means that it should remain performant even for lattices with millions…

Superconductivity · Physics 2024-10-14 Jabir Ali Ouassou

Data gridding is a common task in astronomy and many other science disciplines. It refers to the resampling of irregularly sampled data to a regular grid. We present cygrid, a library module for the general purpose programming language…

Instrumentation and Methods for Astrophysics · Physics 2016-06-08 B. Winkel , D. Lenz , L. Flöer

Multimodal geometry reasoning requires models to jointly understand visual diagrams and perform structured symbolic inference, yet current vision--language models struggle with complex geometric constructions due to limited training data…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Haobo Lin , Tianyi Bai , Chen Chen , Jiajun Zhang , Bohan Zeng , Wentao Zhang , Binhang Yuan

Low-code programming allows citizen developers to create programs with minimal coding effort, typically via visual (e.g. drag-and-drop) interfaces. In parallel, recent AI-powered tools such as Copilot and ChatGPT generate programs from…

Software Engineering · Computer Science 2023-06-01 Nikitha Rao , Jason Tsay , Kiran Kate , Vincent J. Hellendoorn , Martin Hirzel

This study introduces Pedophysics, an open-source Python package designed to facilitate solutions for users who work in the field of soil assessment using near-surface geophysical electromagnetic techniques. At the core of this software is…

Geophysics · Physics 2024-03-13 Gaston Mendoza Veirana , Philippe De Smedt , Jeroen Verhegge , Wim Cornelis

Recent releases of open-source research codes and solvers for numerically solving partial differential equations in Python present a great opportunity for educators to integrate these codes into the classroom in a variety of ways. The ease…

Physics Education · Physics 2020-08-27 Pavan Inguva , Vijesh J. Bhute , Thomas N. H. Cheng , Pierre J. Walker

Motivated by the growing demand for low-precision arithmetic in computational science, we exploit lower-precision emulation in Python -- widely regarded as the dominant programming language for numerical analysis and machine learning.…

Machine Learning · Computer Science 2026-02-26 Erin Carson , Xinye Chen

Background: Digital Image Correlation (DIC) is a widely used full-field measurement technique, but both open-source and commercial packages often have limitations such as operating-system restrictions, lack of support for deployment on…

Image and Video Processing · Electrical Eng. & Systems 2026-02-02 Joel Hirst , Lorna Sibson , Adel Tayeb , Ben Poole , Megan Sampson , Wiera Bielajewa , Michael Atkinson , Alex Marsh , Rory Spencer , Rob Hamill , Cory Hamelin , Allan Harte , Lloyd Fletcher

Pairing-based cryptography (PBC) is crucial in modern cryptographic applications. With the rapid advancement of adversarial research and the growing diversity of application requirements, PBC accelerators need regular updates in algorithms,…

Hardware Architecture · Computer Science 2025-09-15 Tianwei Pan , Tianao Dai , Jianlei Yang , Hongbin Jing , Yang Su , Zeyu Hao , Xiaotao Jia , Chunming Hu , Weisheng Zhao