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We present some simple mass-action systems with limit cycles that fall under the scope of the Deficiency-One Theorem. All the constructed examples are mass-conserving and their stoichiometric subspace is two-dimensional. Using the…

Dynamical Systems · Mathematics 2023-04-25 Balázs Boros , Josef Hofbauer

Network theory is rapidly changing our understanding of complex systems, but the relevance of topological features for the dynamic behavior of metabolic networks, food webs, production systems, information networks, or cascade failures of…

Disordered Systems and Neural Networks · Physics 2007-05-23 Dirk Helbing , Ulrich Witt , Stefan Laemmer , Thomas Brenner

The well-known Deficiency One Theorem gives structural conditions on a chemical reaction network under which, for any set of parameter values, the steady states of the corresponding mass action system may be easily characterized. It is also…

Optimization and Control · Mathematics 2016-03-02 Matthew D. Johnston

We consider countable system of harmonic oscillators on the real line with quadratic interaction potential with finite support and local external force (stationary stochastic process) acting only on one fixed particle. In the case of…

Mathematical Physics · Physics 2022-09-07 Alexandr Lykov , Margarita Melikian

The Deficiency-One Theorem states that there exists a unique positive steady state in each positive stoichiometric class for weakly reversible deficiency-one mass action systems with one linkage class (regardless of the values of the rate…

Dynamical Systems · Mathematics 2022-09-14 Balázs Boros

The functions of many networked systems in physics, biology or engineering rely on a coordinated or synchronized dynamics of its constituents. In power grids for example, all generators must synchronize and run at the same frequency and…

Adaptation and Self-Organizing Systems · Physics 2017-09-13 Debsankha Manik , Marc Timme , Dirk Witthaut

We show that weakly reversible mass-action systems can have a continuum of positive steady states, coming from the zeroes of a multivariate polynomial. Moreover, the same is true of systems whose underlying reaction network is reversible…

Molecular Networks · Quantitative Biology 2022-09-14 Balázs Boros , Gheorghe Craciun , Polly Y. Yu

We derive simple conditions for the stability or instability of the synchronized oscillation of a class of networks of coupled phase-oscillators, which includes many of the systems used in neural modelling.

Pattern Formation and Solitons · Physics 2007-05-23 Guy Katriel

Time-decaying perturbations of nonlinear oscillatory systems in the plane are considered. It is assumed that the unperturbed systems are non-isochronous and the perturbations oscillate with an asymptotically constant frequency. Resonance…

Dynamical Systems · Mathematics 2023-10-10 Oskar A. Sultanov

The stable operation of the electric power grid relies on a precisely synchronized state of all generators and machines. All machines rotate at exactly the same frequency with fixed phase differences, leading to steady power flows…

Adaptation and Self-Organizing Systems · Physics 2020-01-09 Chiara Balestra , Franz Kaiser , Debsankha Manik , Dirk Witthaut

A complex network processing information or physical flows is usually characterized by a number of macroscopic quantities such as the diameter and the betweenness centrality. An issue of significant theoretical and practical interest is how…

Statistical Mechanics · Physics 2009-11-11 Xingang Wang , Ying-Cheng Lai , Chong Heng Lai

We study an opto-electronic time-delay oscillator that displays high-speed chaotic behavior with a flat, broad power spectrum. The chaotic state coexists with a linearly-stable fixed point, which, when subjected to a finite-amplitude…

Chaotic Dynamics · Physics 2015-05-13 Kristine E. Callan , Lucas Illing , Zheng Gao , Daniel J. Gauthier , Eckehard Schöll

We present conditions which guarantee a parametrization of the set of positive equilibria of a generalized mass-action system. Our main results state that (i) if the underlying generalized chemical reaction network has an effective…

Dynamical Systems · Mathematics 2018-05-24 Matthew D. Johnston , Stefan Müller , Casian Pantea

Previous research on nonlinear oscillator networks has shown that chaos synchronization is attainable for identical oscillators but deteriorates in the presence of parameter mismatches. Here, we identify regimes for which the opposite…

Adaptation and Self-Organizing Systems · Physics 2021-04-29 Yoshiki Sugitani , Yuanzhao Zhang , Adilson E. Motter

Oscillatory dynamics are ubiquitous in biological networks. Possible sources of oscillations are well understood in low-dimensional systems, but have not been fully explored in high-dimensional networks. Here we study large networks…

Disordered Systems and Neural Networks · Physics 2016-12-21 Célian Bimbard , Erwan Ledoux , Srdjan Ostojic

It is well known that, for mass-action systems, complex-balanced equilibria are asymptotically stable. For generalized mass-action systems, even if there exists a unique complex-balanced equilibrium (in every stoichiometric class and for…

Dynamical Systems · Mathematics 2022-09-14 Balazs Boros , Stefan Müller , Georg Regensburger

In this paper, we study the stability of an Ordinary Differential Equation (ODE) usually referred to as Cyclic Feedback Loop, which typically models a biological network of molecules where each molecule regulates its successor in a cycle.…

Classical Analysis and ODEs · Mathematics 2023-04-26 Jules Guilberteau

Mounting evidence shows that oscillatory activity is widespread in cell signaling. Here we review some of this recent evidence, focusing on both the molecular mechanisms that potentially underlie such dynamical behavior, and the potential…

Cell Behavior · Quantitative Biology 2022-04-15 Pablo Casani-Galdon , Jordi Garcia-Ojalvo

Linear stability of synchronized states in networks of delay-coupled oscillators depends on the type of interaction, the network and oscillator properties. For inert oscillator response, found ubiquitously from biology to engineering,…

Adaptation and Self-Organizing Systems · Physics 2022-02-02 Dimitrios Prousalis , Lucas Wetzel

Oscillator networks display intricate synchronization patterns. Determining their stability typically requires incorporating the symmetries of the network coupling. Going beyond analyses that appeal only to a network's automorphism group,…

Dynamical Systems · Mathematics 2020-12-14 J. Emenheiser , A. Salova , J. Snyder , J. P. Crutchfield , R. M. D'Souza
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