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Morphogenesis, the process of growth and shape formation in biological tissues, is driven by complex interactions between mechanical, biochemical, and genetic factors. Traditional models of biological growth often rely on the concept of…

Biological Physics · Physics 2025-05-05 Alexander Erlich , Giuseppe Zurlo

Morphogens are proteins, often produced in a localised region, whose concentrations spatially demarcate regions of differing gene expression in developing embryos. The boundaries of expression must be set accurately and in proportion to the…

Subcellular Processes · Quantitative Biology 2009-11-13 Peter McHale , Wouter-Jan Rappel , Herbert Levine

Coordinated motion of cell monolayers during epithelial wound healing and tissue morphogenesis involves mechanical stress generation. Here we propose a model for the dynamics of epithelial expansion that couples mechanical deformations in…

Soft Condensed Matter · Physics 2015-06-09 Shiladitya Banerjee , Kazage J. C. Utuje , M. Cristina Marchetti

A notable feature of the elephant trunk is the pronounced wrinkling that enables its great flexibility. Here, we devise a general mathematical model that accounts for the characteristic skin wrinkles formed during morphogenesis in the…

Biological Physics · Physics 2025-02-07 Yang Liu , Alain Goriely , L. Angela Mihai

Networks of gene regulation govern morphogenesis, determine cell identity and regulate cell function. But we have little understanding, at the local level, of which logics are biologically preferred or even permitted. To solve this puzzle,…

Molecular Networks · Quantitative Biology 2022-09-02 Thomas M. A. Fink , Ryan Hannam

Deformations of cell sheets during morphogenesis are driven by developmental processes such as cell division and cell shape changes. In morphoelastic shell theories of development, these processes appear as variations of the intrinsic…

Soft Condensed Matter · Physics 2021-03-03 Pierre A. Haas , Raymond E. Goldstein

Morphogenetic patterns are highly sophisticated dissipative structures. Are they governed by the same general mechanisms as chemical and hydrodynamic patterns? Turing's symmetry breaking and Wolpert's signalling provide alternative…

Pattern Formation and Solitons · Physics 2019-05-22 L. M. Pismen

In multicellular organisms, epithelial cells form layers separating compartments responsible for different physiological functions. At the early stage of epithelial layer formation, each cell of an aggregate defines an inner and an outer…

Cell Behavior · Quantitative Biology 2010-02-09 A. Veglio , A. Gamba , M. Nicodemi , F. Bussolino , G. Serini

During embryonic development, structures with complex geometry can emerge from planar epithelial monolayers and to study these shape transitions is of key importance for revealing the biophysical laws involved in the morphogenesis of…

Soft Condensed Matter · Physics 2023-08-29 Daria S. Roshal , Karim Azzag , Kirill K. Fedorenko , Sergei B. Rochal , Stephen Baghdiguian

Mitochondrial networks exhibit a variety of complex behaviors, including coordinated cell-wide oscillations of energy states as well as a phase transition (depolarization) in response to oxidative stress. Since functional and structural…

We present a generic framework for modelling three-dimensional deformable shells of active matter that captures the orientational dynamics of the active particles and hydrodynamic interactions on the shell and with the surrounding…

Soft Condensed Matter · Physics 2019-11-20 Luuk Metselaar , Julia M. Yeomans , Amin Doostmohammadi

Directed collective cell migration is central in morphogenesis, wound healing and cancer progression1,2. Although it is well-accepted that the molecular anisotropy of the micro-environment guides this migration3,4, its impact on the pattern…

We propose a unified mechanism that reproduces the sequence of dynamical transitions observed during somitogenesis, the process of body segmentation during embryonic development, that is invariant across all vertebrate species. This is…

Tissues and Organs · Quantitative Biology 2024-06-11 Chandrashekar Kuyyamudi , Shakti N. Menon , Sitabhra Sinha

We explore the possible role of elastic mismatch between epidermis and mesophyll as a driving force for the development of leaf venation. The current prevalent 'canalization' hypothesis for the formation of veins claims that the transport…

Biological Physics · Physics 2008-05-02 M. F. Laguna , S. Bohn , E. A. Jagla

We present a hydrodynamic theory to describe shear flows in developing epithelial tissues. We introduce hydrodynamic fields corresponding to state properties of constituent cells as well as a contribution to overall tissue shear flow due to…

The alignment of cell-cell junctions and associated cortical actomyosin across multiple cells to form supracellular cables in an epithelium is an example of the long range tissue organization that drives morphogenesis. Here we demonstrate…

Tissues and Organs · Quantitative Biology 2018-09-13 Meryl A Spencer , Jesus Lopez-Gay , Hayden Nunley , Yohanns Bellaïche , David K Lubensky

Understanding how biomechanical reorganization governs key biological processes, such as morphogenesis and development, requires predictive insights into stress distributions and cellular behavior. While traditional approaches focused on…

Biological Physics · Physics 2025-08-26 Tianxiang Ma , Valeriia Grudtsyna , Robin V. Bölsterli , Amin Doostmohammadi

The orientation of cell division is a major determinant of three-dimensional plant morphogenesis. Whether and how a simple division orientation rule explains the establishment of symmetric body plans is a fundamental question. Testing such…

Cell Behavior · Quantitative Biology 2026-05-14 Naoya Kamamoto , Koichi Fujimoto

Cells often exhibit different and stable phenotypes from the same DNA sequence. Robustness and plasticity of such cellular states are controlled by diverse transcriptional and epigenetic mechanisms, among them the modification of…

Molecular Networks · Quantitative Biology 2015-06-18 Daniel Jost

Primary lymphoid follicles in secondary lymphoid tissue of mammals are the backbone for the formation of follicular dendritic cell networks. These are important for germinal center reactions. In the context of organogenesis molecular…

Tissues and Organs · Quantitative Biology 2007-05-23 Tilo Beyer , Michael Meyer-Hermann