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Biomedical entity linking is the task of identifying mentions of biomedical concepts in text documents and mapping them to canonical entities in a target thesaurus. Recent advancements in entity linking using BERT-based models follow a…

Computation and Language · Computer Science 2021-03-10 Rajarshi Bhowmik , Karl Stratos , Gerard de Melo

The processing of entities in natural language is essential to many medical NLP systems. Unfortunately, existing datasets vastly under-represent the entities required to model public health relevant texts such as health advice often found…

Computation and Language · Computer Science 2022-10-10 Joseph Gatto , Parker Seegmiller , Garrett Johnston , Sarah M. Preum

While transfer learning has become a ubiquitous technique used across Natural Language Processing (NLP) tasks, it is often unable to replicate the performance of pre-trained models on text of niche domains like Automotive. In this paper we…

Computation and Language · Computer Science 2021-12-02 Anmol Nayak , Hari Prasad Timmapathini

Named entity recognition (NER) is a foundational technology for information extraction. This paper presents a flexible NER framework compatible with different languages and domains. Inspired by the idea of distant supervision (DS), this…

Computation and Language · Computer Science 2019-08-15 Hongyin Zhu , Wenpeng Hu , Yi Zeng

In the last years, the consolidation of deep neural network architectures for information extraction in document images has brought big improvements in the performance of each of the tasks involved in this process, consisting of text…

Computer Vision and Pattern Recognition · Computer Science 2020-05-05 Manuel Carbonell , Alicia Fornés , Mauricio Villegas , Josep Lladós

Extracting entities and relations for types of interest from text is important for understanding massive text corpora. Traditionally, systems of entity relation extraction have relied on human-annotated corpora for training and adopted an…

Computation and Language · Computer Science 2017-06-06 Xiang Ren , Zeqiu Wu , Wenqi He , Meng Qu , Clare R. Voss , Heng Ji , Tarek F. Abdelzaher , Jiawei Han

Named entity recognition (NER) has been studied extensively and the earlier algorithms were based on sequence labeling like Hidden Markov Models (HMM) and conditional random fields (CRF). These were followed by neural network based deep…

Computation and Language · Computer Science 2021-05-10 Shalin Shah , Ryan Siskind

Existing Natural Language Processing (NLP) resources often lack the task-specific information required for real-world problems and provide limited coverage of lesser-known or newly introduced entities. For example, business organizations…

Computation and Language · Computer Science 2026-04-27 Fahmida Alam , Ellen Riloff

Financial named entity recognition (FinNER) from literature is a challenging task in the field of financial text information extraction, which aims to extract a large amount of financial knowledge from unstructured texts. It is widely…

Computation and Language · Computer Science 2022-06-01 Yuzhe Zhang , Hong Zhang

This study proposes a medical entity extraction method based on Transformer to enhance the information extraction capability of medical literature. Considering the professionalism and complexity of medical texts, we compare the performance…

Computation and Language · Computer Science 2025-04-08 Xiaokai Wang , Guiran Liu , Binrong Zhu , Jacky He , Hongye Zheng , Hanlu Zhang

Named entity recognition (NER) aims to identify mentions of named entities in an unstructured text and classify them into predefined named entity classes. While deep learning-based pre-trained language models help to achieve good predictive…

Computation and Language · Computer Science 2023-06-16 Ali Osman Berk Sapci , Oznur Tastan , Reyyan Yeniterzi

Protecting privileged communications and data from inadvertent disclosure is a paramount task in the US legal practice. Traditionally counsels rely on keyword searching and manual review to identify privileged documents in cases. As data…

Information Retrieval · Computer Science 2021-12-17 Haozhen Zhao , Shi Ye , Jingchao Yang

The major task of any e-commerce search engine is to retrieve the most relevant inventory items, which best match the user intent reflected in a query. This task is non-trivial due to many reasons, including ambiguous queries, misaligned…

Machine Learning · Computer Science 2025-07-15 Md. Ahsanul Kabir , Mohammad Al Hasan , Aritra Mandal , Liyang Hao , Ishita Khan , Daniel Tunkelang , Zhe Wu

A detailed understanding of users contributes to the understanding of the Web's evolution, and to the development of Web applications. Although for new Web platforms such a study is especially important, it is often jeopardized by the lack…

Social and Information Networks · Computer Science 2019-10-18 Jun Sun , Steffen Staab , Jérôme Kunegis

Deep neural network models have recently achieved state-of-the-art performance gains in a variety of natural language processing (NLP) tasks (Young, Hazarika, Poria, & Cambria, 2017). However, these gains rely on the availability of large…

Computation and Language · Computer Science 2018-11-15 Maximilian Hofer , Andrey Kormilitzin , Paul Goldberg , Alejo Nevado-Holgado

Knowledge Graphs offer a very useful and powerful structure for representing information, consequently, they have been adopted as the backbone for many applications in e-commerce scenarios. In this paper, we describe an application of…

Information Retrieval · Computer Science 2022-06-03 João Barroca , Abhishek Shivkumar , Beatriz Quintino Ferreira , Evgeny Sherkhonov , João Faria

Clinical text is rich in information, with mentions of treatment, medication and anatomy among many other clinical terms. Multiple terms can refer to the same core concepts which can be referred as a clinical entity. Ontologies like the…

Computation and Language · Computer Science 2024-05-28 Akshit Achara , Sanand Sasidharan , Gagan N

Many statistical learning models hold an assumption that the training data and the future unlabeled data are drawn from the same distribution. However, this assumption is difficult to fulfill in real-world scenarios and creates barriers in…

Human-Computer Interaction · Computer Science 2020-09-16 Yuxin Ma , Arlen Fan , Jingrui He , Arun Reddy Nelakurthi , Ross Maciejewski

The growth rate in the amount of biomedical documents is staggering. Unlocking information trapped in these documents can enable researchers and practitioners to operate confidently in the information world. Biomedical NER, the task of…

Computation and Language · Computer Science 2021-06-24 Xiang Dai

In this study, a novel method for extracting named entities and relations from unstructured text based on the table representation is presented. By using contextualized word embeddings, the proposed method computes representations for…

Computation and Language · Computer Science 2022-01-28 Youmi Ma , Tatsuya Hiraoka , Naoaki Okazaki
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