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Since December 2020, variants of COVID-19 (especially Delta and Omicron) appeared with different characteristics that influenced death and transmissibility emerged around the world. To address the novel dynamics of the disease, we propose a…

Populations and Evolution · Quantitative Biology 2022-01-19 Sarita Bugalia , Jai Prakash Tripathi , Hao Wang

The introduction of the rotavirus vaccine in the United Kingdom (UK) in 2013 led to a noticeable decline in laboratory reports in subsequent years. To assess the impact of vaccination on rotavirus transmissibility we calibrated a stochastic…

Populations and Evolution · Quantitative Biology 2025-06-18 Conor Rosato , Joshua Murphy , Simon Maskell , John Harris

The outbreak of the novel Coronavirus Disease 2019 (COVID-19) has lasted for nearly two years and caused unprecedented impacts on people's daily life around the world. Even worse, the emergence of the COVID-19 Delta variant once again puts…

Computers and Society · Computer Science 2021-11-09 Hui Yin , Xiangyu Song , Shuiqiao Yang , Jianxin Li

We present several related methods for creating confidence intervals to assess disease prevalence in variety of survey sampling settings. These include simple random samples with imperfect tests, weighted sampling with perfect tests, and…

Methodology · Statistics 2023-03-14 Damon Bayer , Michael Fay , Barry Graubard

Results from randomized controlled trials (RCTs) help determine vaccination strategies and related public health policies. However, defining and identifying estimands that can guide policies in infectious disease settings is difficult, even…

Methodology · Statistics 2023-01-24 Mats J. Stensrud , Louisa H. Smith

Understanding the dynamics of antibody levels is crucial for characterizing the time-dependent response to immune events: either infections or vaccinations. The sequence and timing of these events significantly influence antibody level…

With the devastating outbreak of COVID-19, vaccines are one of the crucial lines of defense against mass infection in this global pandemic. Given the protection they provide, vaccines are becoming mandatory in certain social and…

Information Retrieval · Computer Science 2022-12-29 Jai Gupta , Yi Tay , Chaitanya Kamath , Vinh Q. Tran , Donald Metzler , Shailesh Bavadekar , Mimi Sun , Evgeniy Gabrilovich

In winter of 2020, SARS-CoV-2 emerged as a global threat, impacting not only health but also financial and political stability. To address the societal need for monitoring the spread of SARS-CoV-2, many existing diagnostic technologies were…

H1N1 influenza causes substantial seasonal illness and was the subtype of the 2009 influenza pandemic. Precise measures of antigenic distance between the vaccine and circulating virus strains help researchers design influenza vaccines with…

Populations and Evolution · Quantitative Biology 2012-04-30 Keyao Pan , Krystina C. Subieta , Michael W. Deem

Causal mediation analysis has become an important and increasingly used framework for evaluating candidate immune response biomarkers in vaccine research. A controlled effects approach has been proposed to estimate controlled risk curves…

Methodology · Statistics 2026-04-09 Qijia He , Bo Zhang

Understanding how vaccines perform against different pathogen genotypes is crucial for developing effective prevention strategies, particularly for highly genetically diverse pathogens like HIV. Sieve analysis is a statistical framework…

Methodology · Statistics 2025-12-11 James Peng , Michal Juraska , Pamela A. Shaw , Peter B. Gilbert

We consider the problem of distributing a vaccine for immunizing a scale-free network against a given virus or worm. We introduce a new method, based on vaccine dissemination, that seems to reflect more accurately what is expected to occur…

Networking and Internet Architecture · Computer Science 2007-05-23 Alexandre O. Stauffer , Valmir C. Barbosa

With COVID-19 having emerged as the most widespread human pandemic disease in a century, the need to control its spread to avoid massive loss of life became more than necessary, and extremely fast. Several vaccines were developed and the…

The global SARS-CoV-2 (COVID-19) pandemic highlighted the challenge of equitable vaccine distribution between high- and low-income countries. Many high-income countries were reluctant or slow to distribute extra doses of the vaccine to…

Populations and Evolution · Quantitative Biology 2024-08-21 Abraham Holleran , Susan E. Martonosi , Michael Veatch

Most countries have started vaccinating people against COVID-19. However, due to limited production capacities and logistical challenges it will take months/years until herd immunity is achieved. Therefore, vaccination and social distancing…

Physics and Society · Physics 2021-04-22 Sara Grundel , Stefan Heyder , Thomas Hotz , Tobias K. S. Ritschel , Philipp Sauerteig , Karl Worthmann

Background: Rapid testing for an infection is paramount during a pandemic to prevent continued viral spread and excess morbidity and mortality. This study aimed to determine whether alternative testing strategies based on sample pooling can…

Populations and Evolution · Quantitative Biology 2021-01-27 Timo de Wolff , Dirk Pflüger , Michael Rehme , Janin Heuer , Martin-Immanuel Bittner

Treatment protocols, disease understanding, and viral characteristics changed over the course of the COVID-19 pandemic; as a result, the risks associated with patient comorbidities and biomarkers also changed. We add to the conversation…

Machine Learning · Computer Science 2022-11-17 Benjamin Lengerich , Mark E. Nunnally , Yin Aphinyanaphongs , Rich Caruana

The coronavirus disease 2019 (COVID-19) pandemic has spread rapidly across the world, leading to enormous amounts of human death and economic loss. Until definitive preventive or curative measures are developed, policies regarding testing,…

The effort for combating the COVID-19 pandemic around the world has resulted in a huge amount of data, e.g., from testing, contact tracing, modelling, treatment, vaccine trials, and more. In addition to numerous challenges in epidemiology,…

Background: Despite the consensus that vaccines play an important role in combating the global spread of infectious diseases, vaccine inequity is still rampant with deep-seated mentality of self-priority. This study aims to evaluate the…

Populations and Evolution · Quantitative Biology 2023-10-16 Zhenyu Han , Qianyue Hao , Qiwei He , Katherine Budeski , Depeng Jin , Fengli Xu , Kun Tang
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