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While dense biomedical embeddings achieve strong performance, their black-box nature limits their utility in clinical decision-making. Recent question-based interpretable embeddings represent text as binary answers to natural-language…

Computation and Language · Computer Science 2026-03-04 Yixuan Tang , Zhenghong Lin , Yandong Sun , Wynne Hsu , Mong Li Lee , Anthony K. H. Tung

The BVS database (Health Virtual Library) is a centralized source of biomedical information for Latin America and Carib, created in 1998 and coordinated by BIREME (Biblioteca Regional de Medicina) in agreement with the Pan American Health…

Computation and Language · Computer Science 2019-05-07 Felipe Soares , Martin Krallinger

Out-of-vocabulary words account for a large proportion of errors in machine translation systems, especially when the system is used on a different domain than the one where it was trained. In order to alleviate the problem, we propose to…

Computation and Language · Computer Science 2016-08-08 Pranava Swaroop Madhyastha , Cristina España-Bonet

Universal schema builds a knowledge base (KB) of entities and relations by jointly embedding all relation types from input KBs as well as textual patterns expressing relations from raw text. In most previous applications of universal…

Computation and Language · Computer Science 2016-03-04 Patrick Verga , David Belanger , Emma Strubell , Benjamin Roth , Andrew McCallum

Sense representations have gone beyond word representations like Word2Vec, GloVe and FastText and achieved innovative performance on a wide range of natural language processing tasks. Although very useful in many applications, the…

Computation and Language · Computer Science 2021-09-02 Jessica Rodrigues da Silva , Helena de Medeiros Caseli

A currently successful approach to computational semantics is to represent words as embeddings in a machine-learned vector space. We present an ensemble method that combines embeddings produced by GloVe (Pennington et al., 2014) and…

Computation and Language · Computer Science 2019-12-20 Robyn Speer , Joshua Chin

The accurate recognition of symptoms in clinical reports is significantly important in the fields of healthcare and biomedical natural language processing. These entities serve as essential building blocks for clinical information…

Computation and Language · Computer Science 2024-01-30 Mai A. Shaaban , Abbas Akkasi , Adnan Khan , Majid Komeili , Mohammad Yaqub

Cross-lingual transfer of word embeddings aims to establish the semantic mappings among words in different languages by learning the transformation functions over the corresponding word embedding spaces. Successfully solving this problem…

Computation and Language · Computer Science 2018-09-12 Ruochen Xu , Yiming Yang , Naoki Otani , Yuexin Wu

The recent surge of foundation models in computer vision and natural language processing opens up perspectives in utilizing multi-modal clinical data to train large models with strong generalizability. Yet pathological image datasets often…

Computer Vision and Pattern Recognition · Computer Science 2023-07-28 Yunkun Zhang , Jin Gao , Mu Zhou , Xiaosong Wang , Yu Qiao , Shaoting Zhang , Dequan Wang

We propose new static word embeddings optimised for sentence semantic representation. We first extract word embeddings from a pre-trained Sentence Transformer, and improve them with sentence-level principal component analysis, followed by…

Computation and Language · Computer Science 2025-10-01 Takashi Wada , Yuki Hirakawa , Ryotaro Shimizu , Takahiro Kawashima , Yuki Saito

International Classification of Diseases (ICD) are the de facto codes used globally for clinical coding. These codes enable healthcare providers to claim reimbursement and facilitate efficient storage and retrieval of diagnostic…

Computation and Language · Computer Science 2022-02-22 Pavithra Rajendran , Alexandros Zenonos , Josh Spear , Rebecca Pope

Contextual embeddings, such as ELMo and BERT, move beyond global word representations like Word2Vec and achieve ground-breaking performance on a wide range of natural language processing tasks. Contextual embeddings assign each word a…

Computation and Language · Computer Science 2020-04-14 Qi Liu , Matt J. Kusner , Phil Blunsom

Embedding techniques have become essential components of large databases in the deep learning era. By encoding discrete entities, such as words, items, or graph nodes, into continuous vector spaces, embeddings facilitate more efficient…

Information Retrieval · Computer Science 2024-10-18 Shiwei Li , Zhuoqi Hu , Xing Tang , Haozhao Wang , Shijie Xu , Weihong Luo , Yuhua Li , Xiuqiang He , Ruixuan Li

Objective: Today's neural machine translation (NMT) can achieve near human-level translation quality and greatly facilitates international communications, but the lack of parallel corpora poses a key problem to the development of…

Computation and Language · Computer Science 2022-02-08 Shengxuan Luo , Huaiyuan Ying , Jiao Li , Sheng Yu

This paper evaluates existing and newly proposed answer selection methods based on pre-trained word embeddings. Word embeddings are highly effective in various natural language processing tasks and their integration into traditional…

Information Retrieval · Computer Science 2017-08-16 Rishav Chakravarti , Jiri Navratil , Cicero Nogueira dos Santos

Pre-trained word embeddings like ELMo and BERT contain rich syntactic and semantic information, resulting in state-of-the-art performance on various tasks. We propose a very fast variational information bottleneck (VIB) method to…

Computation and Language · Computer Science 2019-10-02 Xiang Lisa Li , Jason Eisner

In this paper, we investigate how the output representation of an end-to-end neural network affects multilingual automatic speech recognition (ASR). We study different representations including character-level, byte-level, byte pair…

Computation and Language · Computer Science 2022-05-03 Liuhui Deng , Roger Hsiao , Arnab Ghoshal

In this paper, we compare automated metrical pattern identification systems available for Spanish against extensive experiments done by fine-tuning language models trained on the same task. Despite being initially conceived as a model…

Computation and Language · Computer Science 2020-11-20 Javier de la Rosa , Salvador Ros , Elena González-Blanco

Much of biomedical and healthcare data is encoded in discrete, symbolic form such as text and medical codes. There is a wealth of expert-curated biomedical domain knowledge stored in knowledge bases and ontologies, but the lack of reliable…

Artificial Intelligence · Computer Science 2020-06-25 David Chang , Ivana Balazevic , Carl Allen , Daniel Chawla , Cynthia Brandt , Richard Andrew Taylor

Semantic neologisms (SN) are defined as words that acquire a new word meaning while maintaining their form. Given the nature of this kind of neologisms, the task of identifying these new word meanings is currently performed manually by…

Computation and Language · Computer Science 2020-01-16 Andrés Torres-Rivera , Juan-Manuel Torres-Moreno