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We study two types of intrinsic uncertainties, statistical errors and system size effects, in estimating shear viscosity via equilibrium molecular dynamics simulations and compare them with the corresponding uncertainties in evaluating the…

Chemical Physics · Physics 2018-09-05 Kang-Sahn Kim , Myung Hoon Han , Changho Kim , Zhen Li , George Em Karniadakis , Eok Kyun Lee

The vertical shear instability (VSI) is widely believed to be effective in driving turbulence in protoplanetary disks. Prior studies on VSI exclusively exploit the reflecting boundary conditions (BCs) at the disk surfaces. VSI depends…

Earth and Planetary Astrophysics · Physics 2024-09-13 Yuzi Wu , Cong Yu , Can Cui

The physics of micron-scale biological colonies usually benefits from different out-of-equilibrium sources. In bacterial colonies and cellular tissues, the growth process is among the important active sources that determine the dynamics. In…

Soft Condensed Matter · Physics 2023-06-16 Forouh Maleki , Ali Najafi

The linear stability of a shear-thinning, viscoelastic fluid undergoing any of the canonical rectilinear shear flows, viz., plane Couette flow and pressure-driven flow through a channel or a tube is analyzed in the creeping-flow limit using…

Fluid Dynamics · Physics 2024-08-05 Ramkarn Patne , Shraddha Mandloi , V. Shankar , Ganesh Subramanian

Viscous fingering (VF) is an interfacial instability that occurs in a narrow confinement or porous medium when a less-viscous fluid pushes a more viscous one, producing finger-like patterns. Controlling the VF instability is essential to…

Fluid Dynamics · Physics 2022-05-18 Alban Pouplard , Peichun Amy Tsai

Pulsating flows through tubular geometries are laminar provided that velocities are moderate. This in particular is also believed to apply to cardiovascular flows where inertial forces are typically too low to sustain turbulence. On the…

Fluid Dynamics · Physics 2020-05-26 Duo Xu , Atul Varshney , Xingyu Ma , Baofang Song , Michael Riedl , Marc Avila , Björn Hof

In vitro collagen networks and in silico fiber network models are typically used to represent extracellular matrix in tissues. Such networks exhibit the phenomenon of strain-stiffening, or an increase in elastic modulus with increasing…

Biological Physics · Physics 2025-03-19 Amanda Parker , J. M. Schwarz

We study numerically shear banded flow in planar and curved Couette geometries. Our aim is to explain two recent observations in shear banding systems of roll cells stacked in the vorticity direction, associated with an undulation of the…

Soft Condensed Matter · Physics 2015-05-14 Suzanne M. Fielding

A three-dimensional cell culture called a spheroid serves as a foundational entity in a wide variety of modern tissue engineering applications, including 3D-bioprinting and preclinical drug testing. Lack of oxygen within tissue spheroids…

Computational Physics · Physics 2025-02-05 Katherine Vilinski-Mazur , Bogdan Kirillov , Oleg Rogozin , Dmitry Kolomenskiy

Viscoelastic fluids exhibit elastic instabilities in simple shear flow and flow through curved streamlines. Surprisingly, we found in a porous medium such fluids show strikingly different hydrodynamic instabilities depicted by very large…

Soft Condensed Matter · Physics 2017-11-22 S. De , J. van der Schaaf , N. G. Deen , J. A. M. Kuipers , E. A. J. F. Peters , J. T. Padding

We use a theoretical approach to examine the effect of a radial fluid flow or electric current on the growth and homeostasis of a cell spheroid. Such conditions may be generated by a drain of micrometric diameter. To perform this analysis,…

Biological Physics · Physics 2021-05-27 Charlie Duclut , Jacques Prost , Frank Jülicher

In this paper, we develop a sharp interface tumor growth model to study the effect of the tumor microenvironment using a complex far-field geometry that mimics a heterogeneous distribution of vasculature. Together with different nutrient…

Numerical Analysis · Mathematics 2020-03-20 Min-Jhe Lu , Chun Liu , John Lowengrub , Shuwang Li

By means of classical density functional theory and its dynamical extension, we consider a colloidal fluid with spherically-symmetric competing interactions, which are well known to exhibit a rich bulk phase behavior. This includes complex…

Soft Condensed Matter · Physics 2018-06-11 Daniel Stopper , Roland Roth

We develop a theory for thermodynamic instabilities of complex fluids composed of many interacting chemical species organised in families. This model includes partially structured and partially random interactions and can be solved exactly…

Biological Physics · Physics 2022-07-21 Giorgio Carugno , Izaak Neri , Pierpaolo Vivo

We introduce a stochastic model describing aggregation of misfolded proteins and degradation by the protein quality control system in a single cell. In analogy with existing literature, aggregates can grow, nucleate and fragment…

Cell Behavior · Quantitative Biology 2012-07-06 Simone Pigolotti , Ludvig Lizana , Daniel Otzen , Kim Sneppen

The shearing instability of a dilute granular mixture composed of smooth inelastic hard spheres or disks is investigated. By using the Navier-Stokes hydrodynamic equations, it is shown that the scaled transversal velocity mode exhibits a…

Statistical Mechanics · Physics 2015-06-15 J. Javier Brey , M. J. Ruiz-Montero

We present a comprehensive study of MHD waves and instabilities in a weakly ionised system, e.g., an interstellar molecular cloud. We determine all the critical wavelengths of perturbations across which the sustainable wave modes can change…

Solar and Stellar Astrophysics · Physics 2011-04-01 Telemachos Ch. Mouschovias , Glenn E. Ciolek , S. A. Morton

The linear stability of viscous Keplerian flow around a gravitating center is studied using the rheological granular fluid model. The linear rheological instability triggered by the interplay of the shear rheology and Keplerian differential…

Earth and Planetary Astrophysics · Physics 2017-07-25 Luka G. Poniatowski , Alexander G. Tevzadze

In this paper, we explore the hydrodynamics of spheroidal active particles in viscosity gradients. This work provides a more accurate modeling approach, in comparison to spherical particles, for anisotropic organisms like Paramecium…

Fluid Dynamics · Physics 2025-07-09 Jiahao Gong , Vaseem A. Shaik , Gwynn J. Elfring

In this paper we study the feathering substructures along spiral arms by considering the perturbational gas response to a spiral shock. Feathers are density fluctuations that jut out from the spiral arm to the inter-arm region at pitch…

Astrophysics of Galaxies · Physics 2012-08-15 Wing-Kit Lee , Frank H. Shu
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