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When modeling complex, hierarchical, and time-dynamic systems, such as biological systems, good computational tools are essential. Current tools, while powerful, often lack comprehensive frameworks for modular model composition,…

Quantitative Methods · Quantitative Biology 2025-10-17 Henrik Podéus , Gustav Magnusson , Sasan Keshmiri , Kajsa Tunedal , Nicolas Sundqvist , William Lövfors , Gunnar Cedersund

High power lasers are used for a variety of manufacturing processes on time and length scales that cover many orders of magnitude and on different materials. The variety of processes achievable through laser-material interaction results…

Simulations of quantum chemistry and quantum materials are believed to be among the most important potential applications of quantum information processors, but realizing practical quantum advantage for such problems is challenging. Here,…

In this work, we present our generic framework to construct, simulate, and calibrate dynamical systems in Python 3. Its goal is to reduce the time it takes to implement a dynamical system with $n$-dimensional states represented by coupled…

Data Analysis, Statistics and Probability · Physics 2023-10-11 Tijs W. Alleman , Christian Stevens , Jan M. Baetens

Heat conduction in one-dimensional (1D) systems is studied based on an analytical S-matrix method, which is developed in the mesoscopic electronic transport theory and molecular dynamic (MD) simulations. It is found that heat conduction in…

Statistical Mechanics · Physics 2007-05-23 Xin Zhou , Mitsumasa Iwamoto

Thermally activated processes are key to understanding the dynamics of physical systems. Thermal diffusion of (quasi-)particles for instance not only yields information on transport and dissipation processes but is also an exponentially…

In this work, we aimed to replicate and extend the results presented in the DiffFluid paper[1]. The DiffFluid model showed that diffusion models combined with Transformers are capable of predicting fluid dynamics. It uses a denoising…

Fluid Dynamics · Physics 2025-07-14 Yannick Gachnang , Vismay Churiwala

In this paper, we investigate the use of variational quantum algorithms for simulating the thermodynamic properties of dinuclear metal complexes. Our study highlights the potential of quantum computing to transform advanced simulations and…

Quantum Physics · Physics 2024-10-28 Ana Clara das Neves Silva , Clebson Cruz

We have developed and implemented a new quantum molecular dynamics approximation that allows fast and accurate simulations of dense plasmas from cold to hot conditions. The method is based on a carefully designed orbital-free implementation…

Plasma Physics · Physics 2015-06-22 Travis Sjostrom , Jerome Daligault

The Python package pylimer-tools is a comprehensive toolkit for computational studies of polymer networks, particularly bead-spring networks. The package provides functionality to generate polymer networks using Monte Carlo (MC) procedures…

Soft Condensed Matter · Physics 2025-08-18 Tim Bernhard , Fabian Schwarz , Andrei A. Gusev

Slowly rotating magnetic massive stars develop "dynamical magnetospheres" (DM's), characterized by trapping of stellar wind outflow in closed magnetic loops, shock heating from collision of the upflow from opposite loop footpoints, and…

Solar and Stellar Astrophysics · Physics 2016-09-07 Stanley P. Owocki , Asif ud-Doula , Jon O. Sundqvist , Veronique Petit , David H. Cohen , Richard H. D. Townsend

This work introduces ChemPlasKin, a freely accessible solver optimized for zero-dimensional (0D) simulations of chemical kinetics of neutral gas in non-equilibrium plasma environments. By integrating the electron Boltzmann equation solver,…

Plasma Physics · Physics 2024-08-06 Xiao Shao , Deanna A. Lacoste , Hong G. Im

In the present work we compare reliability of several most widely used reduced detailed chemical kinetic schemes for hydrogen-air and hydrogen-oxygen combustible mixtures. The validation of the schemes includes detailed analysis of 0D and…

Fluid Dynamics · Physics 2013-12-13 M. F. Ivanov , A. D. Kiverin , M. A. Liberman , A. E Smygalina

We propose a quantum simulation of a supersymmetric lattice model using atoms trapped in a 1D configuration and interacting through a Rydberg dressed potential. The elementary excitations in the model are kinks or (in a sector with one…

Quantum Physics · Physics 2021-09-14 Jiří Minář , Bart van Voorden , Kareljan Schoutens

Perturbative treatments of the lattice dynamics are widely successful for many crystalline materials, their applicability is, however, limited for strongly anharmonic systems, metastable crystal structures and liquids. The full dynamics of…

Materials Science · Physics 2023-10-10 Erik Fransson , Mattias Slabanja , Paul Erhart , Göran Wahnström

Metallic open cell foams have multiple applications in industry, e. g. as catalyst supports in chemical processes. Their regular or heterogeneous microscopic structure determines the macroscopic thermodynamic and chemical properties. We…

Computational Engineering, Finance, and Science · Computer Science 2020-02-11 Tobias M. Scheuermann , Paul Kotyczka , Christian Martens , Haithem Louati , Bernhard Maschke , Marie-Line Zanota , Isabelle Pitault

A mixed basis approach based on density functional theory is extended to one-dimensional(1D) systems. The basis functions here are taken to be the localized B-splines for the two finite non-periodic dimensions and the plane waves for the…

Materials Science · Physics 2016-04-20 Chung-Yuan Ren , Yia-Chung Chang , Chen-Shiung Hsue

Quantitative understanding of the spatial distribution of magnetic fields and Meissner screening currents in two-dimensional (2D) superconductors and mesoscopic thin film superconducting devices is critical to interpreting the results of…

Superconductivity · Physics 2022-07-28 Logan Bishop-Van Horn , Kathryn A. Moler

Generative AIBIM, a successful structural design pipeline, has proven its ability to intelligently generate high-quality, diverse, and creative shear wall designs that are tailored to specific physical conditions. However, the current…

Computer Vision and Pattern Recognition · Computer Science 2024-12-31 Zhili He , Yu-Hsing Wang

We introduce rd-spiral, an open-source Python library for simulating 2D reaction-diffusion systems using pseudo-spectral methods. The framework combines FFT-based spatial discretization with adaptive Dormand-Prince time integration,…

Pattern Formation and Solitons · Physics 2025-06-26 Sandy H. S. Herho , Iwan P. Anwar , Rusmawan Suwarman