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Drug discovery and development is a complex and costly process. Machine learning approaches are being investigated to help improve the effectiveness and speed of multiple stages of the drug discovery pipeline. Of these, those that use…

Artificial Intelligence · Computer Science 2022-09-27 Stephen Bonner , Ian P Barrett , Cheng Ye , Rowan Swiers , Ola Engkvist , Andreas Bender , Charles Tapley Hoyt , William L Hamilton

Retrieval-Augmented Generation (RAG) technology has been widely applied in recent years. However, despite the emergence of various RAG frameworks, a single RAG framework still cannot adapt well to a broad range of downstream tasks.…

Artificial Intelligence · Computer Science 2025-08-20 Yifei Chen , Guanting Dong , Yutao Zhu , Zhicheng Dou

Graph Retrieval-Augmented Generation (Graph RAG) effectively builds a knowledge graph (KG) to connect disparate facts across a large document corpus. However, this broad-view approach often lacks the deep structured reasoning needed for…

Computation and Language · Computer Science 2025-10-27 Jiaoyang Li , Junhao Ruan , Shengwei Tang , Saihan Chen , Kaiyan Chang , Yuan Ge , Tong Xiao , Jingbo Zhu

As the development of the encoder-decoder architecture, researchers are able to study the text generation tasks with broader types of data. Among them, KB-to-text aims at converting a set of knowledge triples into human readable sentences.…

Computation and Language · Computer Science 2022-09-27 Zihao Fu , Yijiang River Dong , Lidong Bing , Wai Lam

Knowledge Graph (KG) reasoning, which aims to infer new facts from structured knowledge repositories, plays a vital role in Natural Language Processing (NLP) systems. Its effectiveness critically depends on constructing informative and…

Machine Learning · Computer Science 2025-08-26 Enjun Du , Siyi Liu , Yongqi Zhang

Knowledge graph (KG) alignment - the task of recognizing entities referring to the same thing in different KGs - is recognized as one of the most important operations in the field of KG construction and completion. However, existing…

Computation and Language · Computer Science 2022-03-16 Vinh Van Tong , Thanh Trung Huynh , Thanh Tam Nguyen , Hongzhi Yin , Quoc Viet Hung Nguyen , Quyet Thang Huynh

Knowledge graph (KG) embedding methods which map entities and relations to unique embeddings in the KG have shown promising results on many reasoning tasks. However, the same embedding dimension for both dense entities and sparse entities…

Computation and Language · Computer Science 2022-05-06 Linlin Chao , Xiexiong Lin , Taifeng Wang , Wei Chu

Building and analysing knowledge graphs (KGs) to aid drug discovery is a topical area of research. A salient feature of KGs is their ability to combine many heterogeneous data sources in a format that facilitates discovering connections.…

Computation and Language · Computer Science 2023-10-25 J. Charles G. Jeynes , Tim James , Matthew Corney

The cold-start problem remains a critical challenge in real-world recommender systems, as new items with limited interaction data or insufficient information are frequently introduced. Despite recent advances leveraging external knowledge…

Information Retrieval · Computer Science 2025-11-26 Wooseong Yang , Weizhi Zhang , Yuqing Liu , Yuwei Han , Yu Wang , Junhyun Lee , Philip S. Yu

In Knowledge Graphs (KGs), where the schema of the data is usually defined by particular ontologies, reasoning is a necessity to perform a range of tasks, such as retrieval of information, question answering, and the derivation of new…

Artificial Intelligence · Computer Science 2025-02-27 Anastasios Nentidis , Charilaos Akasiadis , Angelos Charalambidis , Alexander Artikis

Knowledge graphs (KGs) are structured representations of diversified knowledge. They are widely used in various intelligent applications. In this article, we provide a comprehensive survey on the evolution of various types of knowledge…

Artificial Intelligence · Computer Science 2025-05-22 Xuhui Jiang , Chengjin Xu , Yinghan Shen , Xun Sun , Lumingyuan Tang , Saizhuo Wang , Zhongwu Chen , Yuanzhuo Wang , Jian Guo

Relation extraction is an important but challenging task that aims to extract all hidden relational facts from the text. With the development of deep language models, relation extraction methods have achieved good performance on various…

Computation and Language · Computer Science 2022-08-17 Sheng Zhang , Patrick Ng , Zhiguo Wang , Bing Xiang

LLMs are frequently used tools for conversational generation. Without additional information LLMs can generate lower quality responses due to lacking relevant content and hallucinations, as well as the perception of poor emotional…

Computation and Language · Computer Science 2024-10-22 Alex Clay , Ernesto Jiménez-Ruiz

Knowledge Graphs (KGs) represent relationships between entities in a graph structure and have been widely studied as promising tools for realizing recommendations that consider the accurate content information of items. However, traditional…

Information Retrieval · Computer Science 2024-12-18 Keigo Sakurai , Ren Togo , Takahiro Ogawa , Miki Haseyama

Despite the recent popularity of knowledge graph (KG) related tasks and benchmarks such as KG embeddings, link prediction, entity alignment and evaluation of the reasoning abilities of pretrained language models as KGs, the structure and…

Machine Learning · Computer Science 2023-11-14 Nedelina Teneva , Estevam Hruschka

In the digital era, user interactions with various resources such as databases, data warehouses, websites, and knowledge graphs (KGs) are increasingly mediated through digital platforms. These interactions leave behind digital traces,…

Databases · Computer Science 2025-08-20 Dihia Lanasri

A Knowledge Graph (KG) is the directed graphical representation of entities and relations in the real world. KG can be applied in diverse Natural Language Processing (NLP) tasks where knowledge is required. The need to scale up and complete…

Computation and Language · Computer Science 2024-04-19 Xincan Feng , Zhi Qu , Yuchang Cheng , Taro Watanabe , Nobuhiro Yugami

Replicating AI research is a crucial yet challenging task for large language model (LLM) agents. Existing approaches often struggle to generate executable code, primarily due to insufficient background knowledge and the limitations of…

Computation and Language · Computer Science 2026-04-21 Yujie Luo , Zhuoyun Yu , Xuehai Wang , Yuqi Zhu , Ningyu Zhang , Lanning Wei , Lun Du , Da Zheng , Huajun Chen

Pre-trained language representation models (PLMs) cannot well capture factual knowledge from text. In contrast, knowledge embedding (KE) methods can effectively represent the relational facts in knowledge graphs (KGs) with informative…

Computation and Language · Computer Science 2020-11-24 Xiaozhi Wang , Tianyu Gao , Zhaocheng Zhu , Zhengyan Zhang , Zhiyuan Liu , Juanzi Li , Jian Tang

Knowledge Graphs (KGs) are crucial in the field of artificial intelligence and are widely used in downstream tasks, such as question-answering (QA). The construction of KGs typically requires significant effort from domain experts. Large…

Computation and Language · Computer Science 2025-02-04 Rui Yang , Boming Yang , Aosong Feng , Sixun Ouyang , Moritz Blum , Tianwei She , Yuang Jiang , Freddy Lecue , Jinghui Lu , Irene Li