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In this paper, we consider the challenge of summarizing patients' medical progress notes in a limited data setting. For the Problem List Summarization (shared task 1A) at the BioNLP Workshop 2023, we demonstrate that Clinical-T5 fine-tuned…

Computation and Language · Computer Science 2023-06-09 Potsawee Manakul , Yassir Fathullah , Adian Liusie , Vyas Raina , Vatsal Raina , Mark Gales

In this paper, we explore using the Harrow-Hassidim-Lloyd (HHL) algorithm to address scientific and engineering problems through quantum computing, utilizing the NWQSim simulation package on a high-performance computing platform. Focusing…

Quantum Physics · Physics 2025-08-08 Muqing Zheng , Chenxu Liu , Samuel Stein , Xiangyu Li , Johannes Mülmenstädt , Yousu Chen , Ang Li

Modelling complex real-world situations such as infectious diseases, geological phenomena, and biological processes can present a dilemma: the computer model (referred to as a simulator) needs to be complex enough to capture the dynamics of…

Power system simulations that extend over a time period of minutes, hours, or even longer are called extended-term simulations. As power systems evolve into complex systems with increasing interdependencies and richer dynamic behaviors…

Computational Engineering, Finance, and Science · Computer Science 2021-04-08 Rui Yao , Feng Qiu

Prognostic and Health Management (PHM) has been widely applied to hardware systems in the electronics and non-electronics domains but has not been explored for software. While software does not decay over time, it can degrade over release…

Software Engineering · Computer Science 2023-07-25 Ray Islam , Peter Sandborn

Mobile and wearable healthcare monitoring play a vital role in facilitating timely interventions, managing chronic health conditions, and ultimately improving individuals' quality of life. Previous studies on large language models (LLMs)…

Artificial Intelligence · Computer Science 2025-10-01 Xin Wang , Ting Dang , Xinyu Zhang , Vassilis Kostakos , Michael J. Witbrock , Hong Jia

Stochastic infectious disease models capture uncertainty in public health outcomes and have become increasingly popular in epidemiological practice. However, calibrating these models to observed data is challenging with existing methods for…

Methodology · Statistics 2024-12-18 Prayag Chatha , Fan Bu , Jeffrey Regier , Evan Snitkin , Jon Zelner

Access to real clinical data is often restricted due to privacy obligations, creating significant barriers for healthcare research. Synthetic datasets provide a promising solution, enabling secure data sharing and model development.…

Machine Learning · Computer Science 2024-10-24 Nicholas I-Hsien Kuo , Blanca Gallego , Louisa Jorm

Today's world of scientific software for High Energy Physics (HEP) is powered by x86 code, while the future will be much more reliant on accelerators like GPUs and FPGAs. The portable parallelization strategies (PPS) project of the High…

With the increasing of computer capabilities, Computer aided ergonomics (CAE) offers new possibilities to integrate conventional ergonomic knowledge and to develop new methods into the work design process. As mentioned in [1], different…

Robotics · Computer Science 2011-04-06 Ruina Ma , Damien Chablat , Fouad Bennis , Liang Ma

There have been several recent works proposed to utilize model-based optimization methods to improve the productivity of using high-level synthesis (HLS) to design domain-specific architectures. They would replace the time-consuming…

Hardware Architecture · Computer Science 2024-08-27 Zijian Ding , Atefeh Sohrabizadeh , Weikai Li , Zongyue Qin , Yizhou Sun , Jason Cong

TENSO is a versatile and powerful open-source software package for numerically exact simulations of the dynamics of quantum systems immersed in structured thermal environments. It is based on a tree tensor network decomposition of the…

Discrete-time hidden Markov models (HMMs) have become an immensely popular tool for inferring latent animal behaviors from telemetry data. Here we introduce an open-source R package, momentuHMM, that addresses many of the deficiencies in…

Quantitative Methods · Quantitative Biology 2018-06-13 Brett T. McClintock , Theo Michelot

Stress, anxiety, and nervousness are all high-risk health states in everyday life. Previously, stress levels were determined by speaking with people and gaining insight into what they had experienced recently or in the past. Typically,…

Signal Processing · Electrical Eng. & Systems 2022-04-08 Sadhana Tiwari , Sonali Agarwal

The study of transmission and progression of human papillomavirus (HPV) is crucial for understanding the incidence of cervical cancers, and has been identified as a priority worldwide. The complexity of the disease necessitates a detailed…

With U.S. healthcare spending approaching $5T (NHE Fact Sheet 2024), and 25% of it estimated to be wasteful (Waste in the US the health care system: estimated costs and potential for savings, n.d.), the need to better predict risk and…

Machine Learning · Computer Science 2024-12-06 Ricky Sahu , Eric Marriott , Ethan Siegel , David Wagner , Flore Uzan , Troy Yang , Asim Javed

We propose a framework for realistic data generation and simulation of complex systems and demonstrate its capabilities in the health domain. The main use cases of the framework are predicting the development of risk factors and disease…

Methodology · Statistics 2021-06-08 Santtu Tikka , Jussi Hakanen , Mirka Saarela , Juha Karvanen

Motivated by disease progression-related studies, we propose an estimation method for fitting general non-homogeneous multi-state Markov models. The proposal can handle many types of multi-state processes, with several states and various…

Methodology · Statistics 2024-07-22 Alessia Eletti , Giampiero Marra , Rosalba Radice

Survival data is encountered in a range of disciplines, most notably health and medical research. Although Bayesian approaches to the analysis of survival data can provide a number of benefits, they are less widely used than classical (e.g.…

Computation · Statistics 2020-02-25 Samuel L. Brilleman , Eren M. Elci , Jacqueline Buros Novik , Rory Wolfe

The recently proposed generalized epidemic modeling framework (GEMF) \cite{sahneh2013generalized} lays the groundwork for systematically constructing a broad spectrum of stochastic spreading processes over complex networks. This article…

Physics and Society · Physics 2016-04-11 Faryad Darabi Sahneh , Aram Vajdi , Heman Shakeri , Futing Fan , Caterina Scoglio
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