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State-space models (SSMs) are an important modeling framework for analyzing ecological time series. These hierarchical models are commonly used to model population dynamics, animal movement, and capture-recapture data, and are now…

We present a novel approach to ecological risk assessment by recasting the Species Sensitivity Distribution (SSD) method within a Bayesian nonparametric (BNP) framework. Widely mandated by environmental regulatory bodies globally, SSD has…

Methodology · Statistics 2026-02-05 Louise Alamichel , Julyan Arbel , Guillaume Kon Kam King , Igor Prünster

Recent years have witnessed Spiking Neural Networks (SNNs) gaining attention for their ultra-low energy consumption and high biological plausibility compared with traditional Artificial Neural Networks (ANNs). Despite their distinguished…

Neural and Evolutionary Computing · Computer Science 2024-08-30 Jiahang Cao , Hanzhong Guo , Ziqing Wang , Deming Zhou , Hao Cheng , Qiang Zhang , Renjing Xu

Modelling multiple network data is crucial for addressing a wide range of applied research questions. However, there are many challenges, both theoretical and computational, to address. Network cycles are often of particular interest in…

Applications · Statistics 2025-11-12 Anastasia Mantziou , Sally Keith , David M. P. Jacoby , Simon Lunagomez , Robin Mitra

Deep Neural Networks (DNNs) have recently shown state of the art performance on semantic segmentation tasks, however, they still suffer from problems of poor boundary localization and spatial fragmented predictions. The difficulties lie in…

Computer Vision and Pattern Recognition · Computer Science 2018-10-29 Peng Jiang , Fanglin Gu , Yunhai Wang , Changhe Tu , Baoquan Chen

The rapid expansion of citizen science initiatives has led to a significant growth of biodiversity databases, and particularly presence-only (PO) observations. PO data are invaluable for understanding species distributions and their…

Machine Learning · Computer Science 2026-01-14 Maxime Ryckewaert , Diego Marcos , Christophe Botella , Maximilien Servajean , Pierre Bonnet , Alexis Joly

Accurate prediction of crop yield is critical for supporting food security, agricultural planning, and economic decision-making. However, yield forecasting remains a significant challenge due to the complex and nonlinear relationships…

Applications · Statistics 2026-04-09 Yeonjoo Park , Bo Li , Yehua Li

Statistical analysis of social networks provides valuable insights into complex network interactions across various scientific disciplines. However, accurate modeling of networks remains challenging due to the heavy computational burden and…

Social and Information Networks · Computer Science 2023-07-25 Helal El-Zaatari , Fei Yu , Michael R Kosorok

Heterogeneous network data with rich nodal information become increasingly prevalent across multidisciplinary research, yet accurately modeling complex nodal heterogeneity and simultaneously selecting influential nodal attributes remains an…

Methodology · Statistics 2026-04-14 Zhaoyu Xing , Xiufan Yu

With the exacerbation of the biodiversity and climate crises, macroecological pursuits such as global biodiversity mapping become more urgent. Remote sensing offers a wealth of Earth observation data for ecological studies, but the scarcity…

Computer Vision and Pattern Recognition · Computer Science 2025-10-21 Elena Plekhanova , Damien Robert , Johannes Dollinger , Emilia Arens , Philipp Brun , Jan Dirk Wegner , Niklaus Zimmermann

Accurate predictions and representations of plant growth patterns in simulated and controlled environments are important for addressing various challenges in plant phenomics research. This review explores various works on state-of-the-art…

Quantitative Methods · Quantitative Biology 2025-07-17 Mohamed Debbagh , Shangpeng Sun , Mark Lefsrud

Despite their outstanding performance in a broad spectrum of real-world tasks, deep artificial neural networks are sensitive to input noises, particularly adversarial perturbations. On the contrary, human and animal brains are much less…

Neural and Evolutionary Computing · Computer Science 2022-05-23 Xiyuan Chen , Xingyu Li , Yi Zhou , Tianming Yang

Ecological networks describe the interactions between different species, informing us of how they rely on one another for food, pollination and survival. If a species in an ecosystem is under threat of extinction, it can affect other…

Populations and Evolution · Quantitative Biology 2023-07-06 Chris Jones , Damaris Zurell , Karoline Wiesner

We study a model ecosystem by means of dynamical techniques from disordered systems theory. The model describes a set of species subject to competitive interactions through a background of resources, which they feed upon. Additionally…

Populations and Evolution · Quantitative Biology 2009-11-13 Yoshimi Yoshino , Tobias Galla , Kei Tokita

Simple models have been used to describe ecological processes for over a century. However, the complexity of ecological systems makes simple models subject to modeling bias due to simplifying assumptions or unaccounted factors, limiting…

Quantitative Methods · Quantitative Biology 2024-01-24 Jorge Arroyo-Esquivel , Christopher A Klausmeier , Elena Litchman

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz

Recently there has been growing interest in the use of Maximum Relative Entropy (MaxREnt) as a tool for statistical inference in ecology. In contrast, here we propose MaxREnt as a tool for applying statistical mechanics to ecology. We use…

Populations and Evolution · Quantitative Biology 2007-12-13 Roderick C. Dewar , Annabel Porte

Recently, density map regression-based methods have dominated in crowd counting owing to their excellent fitting ability on density distribution. However, further improvement tends to saturate mainly because of the confusing background…

Computer Vision and Pattern Recognition · Computer Science 2022-12-13 Chenliang Gu , Changan Wang , Bin-Bin Gao , Jun Liu , Tianliang Zhang

Continuous space species distribution models (SDMs) have a long-standing history as a valuable tool in ecological statistical analysis. Geostatistical and preferential models are both common models in ecology. Geostatistical models are…

Applications · Statistics 2023-07-17 Mario Figueira , David Conesa , Antonio López-Quílez , Iosu Paradinas

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels